View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10271_high_22 (Length: 342)
Name: NF10271_high_22
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 194 - 332
Target Start/End: Original strand, 38711257 - 38711395
Alignment:
| Q |
194 |
cagcttcgtctcttatataaaccaataataaatataaatggcttgatagttgaaatgtgagacttaaaaagtttaagtgataaggaggttgagaattcaa |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38711257 |
cagcttcgtctcttatataaaccaataataaatataaatggcttgatagttgaaatgtgagacttaaaaagtttaagtgataaggaggttgagaattcaa |
38711356 |
T |
|
| Q |
294 |
ttctcacccttgcataaatattaatactaacattctctg |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38711357 |
ttctcacccttgcataaatattaatactaacattctctg |
38711395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 38711080 - 38711198
Alignment:
| Q |
18 |
gaaggggtggttaattaagtctaataattgtgtttaaggcctaatatatggaggcgtaaaagttttattatacaatacaatatgaagatcacacaaaaat |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38711080 |
gaaggggtggttaattaagcctaataattgtgtttaaggcctaatatattgaggcgtaaaagttttattgtacaatacaatatgaagatcacacaaaaat |
38711179 |
T |
|
| Q |
118 |
cataatagcatattagtat |
136 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38711180 |
cataatagcatattagtat |
38711198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University