View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_high_37 (Length: 268)
Name: NF10271_high_37
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_high_37 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 7501 - 7363
Alignment:
| Q |
9 |
aattatatgtcattcctcaaaaagtcttcatttacagaaacctcaataaacattctatctgaaaaattcaatatcaacccggaaatcaactcaaacatcc |
108 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7501 |
aattatgtgtcattcctcgaaaagtcttcatttacagaaacctcaataaacattctatctgaaaaattcaatatcaacccggaaatcaactcaaacatcc |
7402 |
T |
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| Q |
109 |
taaggatctctttcatacaccacaaattttctagacaca |
147 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
7401 |
taaggatctctttcatacaccacaaattttctagacaca |
7363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 7205 - 7103
Alignment:
| Q |
146 |
catttttcacagaagccaaatcttcataacataaaataaataaaaaatccaactaaccgaatcattagctttctcaaaacgaactttaatgattgaacac |
245 |
Q |
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||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7205 |
catttttcacaaaagccaaatcttcataacatataataaa--aaaaatccaactaaccgaatcattagctttctcaaaatgaactttaatgattgaacac |
7108 |
T |
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| Q |
246 |
tcctt |
250 |
Q |
| |
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||||| |
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| T |
7107 |
tcctt |
7103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 23384967 - 23385105
Alignment:
| Q |
9 |
aattatatgtcattcctcaaaaagtcttcatttacagaaacctcaataaacattctatctgaaaaattcaatatcaacccggaaatcaactcaaacatcc |
108 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23384967 |
aattatgtgtcattcctcgaaaagtcttcatttacagaaacctcaataaacattctatctgaaaaattcaatatcaacccggaaatcaactcaaacatcc |
23385066 |
T |
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| Q |
109 |
taaggatctctttcatacaccacaaattttctagacaca |
147 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
23385067 |
taaggatctctttcatacaccacaaattttctagacaca |
23385105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 23385263 - 23385365
Alignment:
| Q |
146 |
catttttcacagaagccaaatcttcataacataaaataaataaaaaatccaactaaccgaatcattagctttctcaaaacgaactttaatgattgaacac |
245 |
Q |
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||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23385263 |
catttttcacaaaagccaaatcttcataacatataataaa--aaaaatccaactaaccgaatcattagctttctcaaaatgaactttaatgattgaacac |
23385360 |
T |
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| Q |
246 |
tcctt |
250 |
Q |
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||||| |
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|
| T |
23385361 |
tcctt |
23385365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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