View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_high_4 (Length: 464)
Name: NF10271_high_4
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 12842810 - 12842365
Alignment:
| Q |
1 |
aaaattaagtcccaatattttctggtcaactaccaaaactaattttacactttagttgaattattagaatctactattggaattcatgagtaattgaccc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12842810 |
aaaattaagtcccaatattttctggtcaactaccaaaactaattttacactttagttga-ttattagaatctactattggaattcatgagtaattgaccc |
12842712 |
T |
|
| Q |
101 |
atatatacattattatgtagaataatagtacttagttttagtttgactaagtcaaagttaattaaatacagtcttttattcaaatcgattagttactttg |
200 |
Q |
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| T |
12842711 |
atatatacattat---gtagaataatagtacttagttttagtttgactaaggtaaagttaattaaatacagtcttttattcaaatctgttggttactttg |
12842615 |
T |
|
| Q |
201 |
aagattactgattgttattttgaatgggtttattaccttgtgacatacataaacccctttatacttggattgattattcaataatatttctaaaatattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||||| |
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| T |
12842614 |
aagattactgattgttattttgaatgggtttattaccttgtgacatacataaacccctttgtacgtagattgattaatcaataatatttctaaaatattc |
12842515 |
T |
|
| Q |
301 |
aatacattcatcaacgtagaaatattg----nnnnnnnnnnactcaaacgtataaatattagctagattgaatcataaaaatggtgacaaatataagaat |
396 |
Q |
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| T |
12842514 |
aatacattcatcaacgtagaaatattgttttttttttttttactcaaacgtataaatattagatagattgaatcataaaaatggtgacaaatataagaaa |
12842415 |
T |
|
| Q |
397 |
ctagaaggtgatatttagacaatctttggacatggagggaccgattgcct |
446 |
Q |
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| T |
12842414 |
ctataaggtgatatttagacaatcttcggacatggagggaccgattgcct |
12842365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 124 - 421
Target Start/End: Complemental strand, 12841365 - 12841063
Alignment:
| Q |
124 |
aatagtacttagttttagtttgactaagtcaaagttaattaaat--acagtcttttattcaaatcgattagttactttgaagattactga----ttgtta |
217 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||| || ||||| ||||||||| ||| ||| ||| | |||||||| ||| | |||| |
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| T |
12841365 |
aataatacttagttttagtttgactaagtcaaacttaattagatgagcagtcatttattcaagtcggttaattaggtagaagattattgatagttagtta |
12841266 |
T |
|
| Q |
218 |
ttttgaatgggtttattaccttgtgacatacataaacccctttatacttggattgattattcaataatatttctaaaatattcaatacattcatcaacgt |
317 |
Q |
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| T |
12841265 |
ttttgaatgggtttatttccttgtgatataattaaacccctttgtacttggattgattattcaataatatttctaaaatattcagtacattcatcaacgt |
12841166 |
T |
|
| Q |
318 |
agaaatattgnnnnnnnnnnactcaaacgtata-aatattagctagattgaatcataaaaatggtgacaaatataagaatctagaaggtgatatttagac |
416 |
Q |
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| T |
12841165 |
agaaataat--tgtttttttactcaaacgtatagaatattagctagattgaatcataacaatggtgacaaatataagaaactagaaggtgatatttagac |
12841068 |
T |
|
| Q |
417 |
aatct |
421 |
Q |
| |
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||||| |
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| T |
12841067 |
aatct |
12841063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 131 - 321
Target Start/End: Original strand, 12862826 - 12863013
Alignment:
| Q |
131 |
cttagttttagtttgactaagtcaaagttaattaaatacagtcttttattcaaatcgattagttactttgaagattactgattgttattttgaatgggtt |
230 |
Q |
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|||||||||||||||| ||| |||| ||||| |||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12862826 |
cttagttttagtttgattaaatcaaggttaa----atacagtcttttattcaattcggttagttactttgaagattactgatagttattttgaatgggtt |
12862921 |
T |
|
| Q |
231 |
tattaccttgtgacatacataaacccctttatacttggattgatt-attcaataatatttctaaaatattcaatacattcatcaacgtagaa |
321 |
Q |
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| T |
12862922 |
tattaccttgtgacatgcataaacccctttgtacttggattgattaattcaataatatttctaaaatatttagtacattcatcaacatagaa |
12863013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 13124974 - 13124871
Alignment:
| Q |
3 |
aattaagtcccaatattttctggtcaactaccaaaactaattttacactttagttgaattattagaatctactattggaattcatgagtaattgacccat |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13124974 |
aattaagtcccaatattttctggtcaactaccaaaactaattttacactttagttg-attattagaatctactattggaattcttgagtaattgacccat |
13124876 |
T |
|
| Q |
103 |
atata |
107 |
Q |
| |
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||||| |
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| T |
13124875 |
atata |
13124871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 12862673 - 12862804
Alignment:
| Q |
5 |
ttaagtcccaatattttctggtcaactaccaaaactaattttacactttagttgaattattagaatctactattggaattcatgagtaattgacccatat |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12862673 |
ttaagtcccaatattttctggtcaactaccaaaactaattttacactttagttg-attattagaatctactgttggaattcatgagtaattgacccatat |
12862771 |
T |
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| Q |
105 |
atacattattatgtagaataatagtacttagtttta |
140 |
Q |
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||| |||||| |||||||| | |||||||||| |
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| T |
12862772 |
ctac---tttatgttgaataatattgcttagtttta |
12862804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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