View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_high_40 (Length: 260)
Name: NF10271_high_40
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 7709712 - 7709954
Alignment:
| Q |
1 |
tagcattgacattgacagcggtagttgacgagctagcatgatttgttgcatctctagcattgacattgacagcggtatttgacgggctagcaggctgtgt |
100 |
Q |
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| T |
7709712 |
tagcattgacattgacaacggtagttgacgagctagcgagatttgttgaatctctagcattgacattgacagcggtatttgacgggctagcaggctgtgt |
7709811 |
T |
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| Q |
101 |
tgaatctctagcattggcatgaacaccgagacgaatagaactccttgattgagtggcggcgtgagttgtcgcgcccagcctattgtaactttgttttcta |
200 |
Q |
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| T |
7709812 |
tgaatctctagcattggcatgaacaccgagacgaatagaactccttgatcgagtggcggcgtgagttgccgcgcccagcctattgtaactttgttttcta |
7709911 |
T |
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| Q |
201 |
gaacgcaggaaatcttgtacacgctcgtcatcactgtcataac |
243 |
Q |
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| T |
7709912 |
gaacgcaggaaatcctgtacacgctcgtcatcactgtcataac |
7709954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 7709661 - 7709773
Alignment:
| Q |
4 |
cattgacattgacagcggtagttgacgagctagcatgatttgttgcatctctagcattgacattgacagcggtatttgacgggctagcaggctgtgttga |
103 |
Q |
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||||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||||||||||| ||||| |||||| |||||| | | |||||| |
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| T |
7709661 |
cattgacattggcagcggtatttgacgagctagcgggctttgttgcatctctagcattgacattgacaacggtagttgacgagctagcgagatttgttga |
7709760 |
T |
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| Q |
104 |
atctctagcattg |
116 |
Q |
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| T |
7709761 |
atctctagcattg |
7709773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 7709646 - 7709719
Alignment:
| Q |
43 |
ttgttgcatctctagcattgacattgacagcggtatttgacgggctagcaggctgtgttgaatctctagcattg |
116 |
Q |
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||||||||||| || ||||||||||| ||||||||||||||| |||||| |||| ||||| ||||||||||||| |
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| T |
7709646 |
ttgttgcatctttaacattgacattggcagcggtatttgacgagctagcgggctttgttgcatctctagcattg |
7709719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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