View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_high_46 (Length: 242)
Name: NF10271_high_46
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 29933550 - 29933773
Alignment:
| Q |
1 |
cccttattttgaatacaataaattaagacatttctgataattgattccattaatctctctccaaagccaaactaatattgattttactaattccattctg |
100 |
Q |
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| T |
29933550 |
cccttattttgaatacaataaattaatt--ttactaataattgattccattaatctctctccaaagccaaactaatattgattttactaattccattctg |
29933647 |
T |
|
| Q |
101 |
tgaagcatcaaacgtgtagatagatgatcatcaccaagaccaccaaacaattccttgattgggtgagatattgtgtattgataaactttcaggttacaaa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29933648 |
tgaagcatcaaacgtgtagatacatgatcatcaccaagaccaccaaacaattccttgattgggtgagatattgtgtattgataaactttcaggttacaaa |
29933747 |
T |
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| Q |
201 |
atgcacactgaaaatacattttattt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
29933748 |
atgcacactgaaaatacattttattt |
29933773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 29930975 - 29931043
Alignment:
| Q |
5 |
tattttgaatacaataaattaagacatttctgataattgattccattaatctctctccaaagccaaacta |
74 |
Q |
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||||| |||||||| |||||||| |||||||| ||| ||||||||||||||||| ||| ||||||||||| |
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| T |
29930975 |
tatttcgaatacaacaaattaaggcatttctggtaactgattccattaatctctatcc-aagccaaacta |
29931043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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