View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10271_high_5 (Length: 463)
Name: NF10271_high_5
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_high_5 |
 | |
|
| [»] scaffold0536 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Complemental strand, 12540669 - 12540242
Alignment:
| Q |
18 |
actaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggaaatggggagagaaagaagttggttggcagagatggc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12540669 |
actaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcagagatggc |
12540570 |
T |
|
| Q |
118 |
atagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12540569 |
atagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttc |
12540470 |
T |
|
| Q |
218 |
aagaaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagatttagagactgcaagccacatgattaattaaaggagtattgcat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12540469 |
aagaaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagatttagagactgcaagccacatgattaattaaaggagtattgcat |
12540370 |
T |
|
| Q |
318 |
gtgttttctgaatttatcctaataacgtcgttgtttcgttaagaagaagtgtgaatgttaaggattcggttgatgaatttcaagtctgatttgaggtggt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12540369 |
gtgttttctgaatttatcctaataacgtcgttgtttcgttaagaagaagtgtgaatgctatggattcggttgatgaatttcaagtctgatttgaggtggt |
12540270 |
T |
|
| Q |
418 |
cggtgctatcggttttctggttcggtgt |
445 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
12540269 |
cggtgctatcggttttctggttcggtgt |
12540242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 31 - 398
Target Start/End: Complemental strand, 28385305 - 28384938
Alignment:
| Q |
31 |
gtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggaaatggggagagaaagaagttggttggcagagatggcatagagaaggcta |
130 |
Q |
| |
|
|||||| |||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
28385305 |
gtccgaagaattggagtggaagtaggtgtaacggaatggtgtacaaatggtaatggggagagaaagaagttggtgagcagagataacatagagaaggcta |
28385206 |
T |
|
| Q |
131 |
tgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttcaagaaggtggttc |
230 |
Q |
| |
|
|||||| ||||||||| ||||| ||||||||||||||||||||| |||||| |||||| | ||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
28385205 |
tgaggaaattgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaagaaggtggttc |
28385106 |
T |
|
| Q |
231 |
ctctcataataatttgttatctttgatcgacgaaattaaaagatttagagactgcaagccacatgattaattaaaggagtattgcatgtgttttctgaat |
330 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||| |||||||||| |||||| |||| ||||||||||||| ||| || ||| | ||| ||||| |||| |
|
|
| T |
28385105 |
ctcttataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgattaatcaaatgaatatggtatgagttttttgaac |
28385006 |
T |
|
| Q |
331 |
ttatcctaataacgtcgttgtttcgttaagaagaagtgtgaatgttaaggattcggttgatgaatttc |
398 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | |||| | ||||||| | ||| ||| |||||||||| |
|
|
| T |
28385005 |
ttatcctaataacgtcgttgtttcgtcaagcacaagtattaatgttatgtatttggtcgatgaatttc |
28384938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 3417722 - 3418012
Alignment:
| Q |
18 |
actaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggaaatggggagagaaagaagttggttggcagagatggc |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||| || || |||| | ||||||||||||||||||||| ||||||||| | |
|
|
| T |
3417722 |
actaataacacaagtccgaggaattggagtggaagtaggtgcaacagaatggcgtgcacatggtattggggagagaaagaagttggtgagcagagatgac |
3417821 |
T |
|
| Q |
118 |
atagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttc |
217 |
Q |
| |
|
||||||||||| ||||||||||||||||| || || |||| |||||| ||||||||||||||| |||||| ||||||||||||||| ||||||| ||| |
|
|
| T |
3417822 |
atagagaaggcaatgaggagattgatggacagtagtgatgaggctgaaggtatgagactacgtgctcgagagcttggagagaaggctaaacgagctattc |
3417921 |
T |
|
| Q |
218 |
aagaaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagatttagagactgcaagccacatgattaattaaagga |
308 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| |||||||||||||| |||||| || |||||||||||||||| ||||||||||||||| |
|
|
| T |
3417922 |
aagaaggtggttcctcacatcataatttgttaactttgatcgacgaacttaaaaagttgagagactgcaagccacttgattaattaaagga |
3418012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 13454818 - 13454468
Alignment:
| Q |
18 |
actaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggaaatggggagagaaagaagttggttggcagagatggc |
117 |
Q |
| |
|
|||||||||||| || |||||||||||| | ||||| |||||||||||||||||||||| ||| || ||||||| |||||||||| ||| |||| || |
|
|
| T |
13454818 |
actaataacacaagttcgaggaattggaattgaagtcggtgcaacagaatggtgtacaagtggtgttgcggagagagagaagttggtgagcaaagatagc |
13454719 |
T |
|
| Q |
118 |
atagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttc |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| |||||||| ||||||| || ||||||| |||||| ||||||| ||||||| || |||| ||| |
|
|
| T |
13454718 |
atagagaaggctgtgaggagattgatgggcggtggtgatgaagctaaaaatatcagggtacgtgctcgagagtttggagaaaaggctacacaagctattc |
13454619 |
T |
|
| Q |
218 |
aagaaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagatttagagactgcaagccacatgattaatt-aaaggagtattgca |
316 |
Q |
| |
|
|| ||||||| || ||| ||||||||||||| ||||||| || ||| |||||||||| ||| || |||||| ||||||||||| ||||||| |||| |
|
|
| T |
13454618 |
aaaaaggtggctcatcttataataatttgttggctttgattgatgaacttaaaagattgagaaacctcaagccgcatgattaattcaaaggagcattgtg |
13454519 |
T |
|
| Q |
317 |
tgtgttttctgaatttatcctaataacgtcgttgtttcgttaagaagaagt |
367 |
Q |
| |
|
| ||||| | || || | |||||||| | |||||||||| ||| |||||| |
|
|
| T |
13454518 |
taagttttttcaactttttctaataacattgttgtttcgtcaagcagaagt |
13454468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 22 - 274
Target Start/End: Complemental strand, 13448343 - 13448091
Alignment:
| Q |
22 |
ataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggaaatggggagagaaagaagttggttggcagagatggcatag |
121 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |||||||||||||||||||| | ||| | ||||||||||||||| || |||||||| |||||| |
|
|
| T |
13448343 |
ataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgtcgcggagagaaagaagttagtgagcagagatagcatag |
13448244 |
T |
|
| Q |
122 |
agaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttcaaga |
221 |
Q |
| |
|
|||||||| | |||||||||||||| |||||| |||||||||||||||| || |||||||| |||||| ||||||| || |||| || |||| ||||||| |
|
|
| T |
13448243 |
agaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagctatacaagctattcaaga |
13448144 |
T |
|
| Q |
222 |
aggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagat |
274 |
Q |
| |
|
|||||| || ||| ||||||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
13448143 |
aggtggctcgtcttataataatttgttggctttgattgacgaacttaaaagat |
13448091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 34 - 372
Target Start/End: Complemental strand, 13440168 - 13439829
Alignment:
| Q |
34 |
cgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggaaatggggagagaaagaagttggttggcagagatggcatagagaaggctatga |
133 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||||||||| ||||| || ||||||| |||||||||| |||| ||| ||||||||||||| ||| |
|
|
| T |
13440168 |
cgaggaattggagtggaagtcggtgcaacggaatggtgtaagaatggtgttgcggagagagagaagttggtgagcagggataacatagagaaggctgtga |
13440069 |
T |
|
| Q |
134 |
ggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttcaagaaggtggttcctc |
233 |
Q |
| |
|
||||||||||||| |||| |||||||| |||||||||| |||| ||| | |||| ||||||| ||||||| || |||| ||||||||||||| || || |
|
|
| T |
13440068 |
ggagattgatggagaatggtgatgaagctaaaaatatgaggctacttgctcaagagtttggagaaaaggctacacaagctattcaagaaggtggctcgtc |
13439969 |
T |
|
| Q |
234 |
tcataataatttgttatctttgatcgacgaaattaaaagatttagagactgcaagccacatgattaatt-aaaggagtattgcatgtgttttctgaattt |
332 |
Q |
| |
|
| ||||||||||||| |||| || || ||| |||||||||| |||||| ||||| |||||||||||| |||||| ||||| | |||||| | || | |
|
|
| T |
13439968 |
ttataataatttgttggctttaattgaagaacttaaaagattgagagaccccaagcgacatgattaattcaaaggactattgtctatgttttttcaacct |
13439869 |
T |
|
| Q |
333 |
atcctaataacgtcgttgtttcgttaagaagaagtgtgaa |
372 |
Q |
| |
|
|||||||||| | |||| ||||| ||| ||||||||||| |
|
|
| T |
13439868 |
atcctaataatattgttggttcgtcaagcagaagtgtgaa |
13439829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 34 - 291
Target Start/End: Complemental strand, 48965297 - 48965040
Alignment:
| Q |
34 |
cgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggaaatggggagagaaagaagttggttggcagagatggcatagagaaggctatga |
133 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||||||| | ||| || || ||| ||||| |||| | || ||| |||||||||||||| ||| |
|
|
| T |
48965297 |
cgagggattggagtggaagttggtgcaacagaatggtgtttgactggttttgaagaaagagagaagctggtgagtagtgatagcatagagaaggctgtga |
48965198 |
T |
|
| Q |
134 |
ggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttcaagaaggtggttcctc |
233 |
Q |
| |
|
||||||||||||| ||||| |||||||||| || || ||| ||||| | |||| ||||||| |||||||||||||| ||||||||||||| || || |
|
|
| T |
48965197 |
ggagattgatggacagtggtgatgaagctgagaaaattagaagtcgtgctcaagagtttggagaaaaggctagacgagccattcaagaaggtggctcgtc |
48965098 |
T |
|
| Q |
234 |
tcataataatttgttatctttgatcgacgaaattaaaagatttagagactgcaagcca |
291 |
Q |
| |
|
|||||| ||||||||| | ||||| || || | |||||||| ||||| |||||||| |
|
|
| T |
48965097 |
tcataagaatttgttagccttgattgatgatctcaaaagattgagagatagcaagcca |
48965040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 302
Target Start/End: Complemental strand, 48958028 - 48957844
Alignment:
| Q |
118 |
atagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttc |
217 |
Q |
| |
|
||||| |||||| ||| |||||||||||| |||||| |||||||||| | || | || ||||| | |||| | ||||| ||||||| ||||||||||| |
|
|
| T |
48958028 |
atagaaaaggctgtgaagagattgatggacggtggtgatgaagctgaggaaatcaaacagcgtgctcaagagttcggagaaaaggctacacgagctgttc |
48957929 |
T |
|
| Q |
218 |
aagaaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagatttagagactgcaagccacatgattaatt |
302 |
Q |
| |
|
|||||||||| || |||||||| |||||||| |||||||| || || ||||| | | ||| |||||||| ||| ||||||||| |
|
|
| T |
48957928 |
aagaaggtggatcatctcataacaatttgttgtctttgattgatgatcttaaacaaatgagaaactgcaagacacttgattaatt |
48957844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 118 - 299
Target Start/End: Complemental strand, 48961175 - 48960994
Alignment:
| Q |
118 |
atagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttc |
217 |
Q |
| |
|
||||||||||| |||| | ||| ||||| |||||| ||||||| ||| |||| |||| ||||| |||||| |||| || ||||||| | ||||||||| |
|
|
| T |
48961175 |
atagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttc |
48961076 |
T |
|
| Q |
218 |
aagaaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagatttagagactgcaagccacatgatta |
299 |
Q |
| |
|
||| ||| || || ||||||||||||||||| |||| || || || |||||||||| |||||| | ||||||| |||||| |
|
|
| T |
48961075 |
aagtaggcggctcatctcataataatttgttggctttaattgatgatcttaaaagattgagagacaggaagccacttgatta |
48960994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 245
Target Start/End: Complemental strand, 48967352 - 48967215
Alignment:
| Q |
108 |
cagagatggcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctaga |
207 |
Q |
| |
|
||||||| ||||||||| ||||| || ||||||||||| || |||||||||| || || |||| |||||| ||||| ||||||| ||||||| | |
|
|
| T |
48967352 |
cagagataacatagagaaagctataagaagattgatggacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctaca |
48967253 |
T |
|
| Q |
208 |
cgagctgttcaagaaggtggttcctctcataataattt |
245 |
Q |
| |
|
||||| ||||||||||||| | ||| |||||||||| |
|
|
| T |
48967252 |
cgagcacttcaagaaggtggcttgtcttataataattt |
48967215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 6772 - 6852
Alignment:
| Q |
84 |
tggggagagaaagaagttggttggcagagatggcatagagaaggctatgaggagattgatggatggtggttatgaagctga |
164 |
Q |
| |
|
|||||||||| ||||| |||| || || ||| | || ||||||||| ||||||||||||||||||||||| | |||||||| |
|
|
| T |
6772 |
tggggagagagagaaggtggtggggagggatagtattgagaaggctgtgaggagattgatggatggtggtgacgaagctga |
6852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 302
Target Start/End: Original strand, 12641776 - 12641960
Alignment:
| Q |
118 |
atagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttc |
217 |
Q |
| |
|
|||||||| ||| |||||||||||||||| | |||| |||||||| | | || |||| |||||| | |||| |||| | ||||||| || |||||| |
|
|
| T |
12641776 |
atagagaaagctgtgaggagattgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgctgttg |
12641875 |
T |
|
| Q |
218 |
aagaaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagatttagagactgcaagccacatgattaatt |
302 |
Q |
| |
|
||||||| || || |||||||| |||||||| ||||||| |||| ||||||||| |||||| |||| |||| ||| ||||| |
|
|
| T |
12641876 |
aagaaggcgggtcgtctcataacaatttgttggctttgattaacgatcttaaaagatcgagagaccgcaaaccacttgaataatt |
12641960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 249
Target Start/End: Original strand, 12590455 - 12590595
Alignment:
| Q |
109 |
agagatggcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagac |
208 |
Q |
| |
|
|||||| ||||| |||| ||| |||| ||||||||||||||||| ||||||||| | || |||| |||| | |||| | || || || ||||||| |
|
|
| T |
12590455 |
agagatagcataaagaatgctgtgagaagattgatggatggtggcattgaagctgaggaaatcagacgacgtagtcaagagttaggggaaaaagctagac |
12590554 |
T |
|
| Q |
209 |
gagctgttcaagaaggtggttcctctcataataatttgtta |
249 |
Q |
| |
|
|||||||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
12590555 |
tagctgttcaacaaggtggctcctctaataataatttgtta |
12590595 |
T |
|
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