View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10271_high_50 (Length: 240)
Name: NF10271_high_50
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_high_50 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 39935489 - 39935711
Alignment:
| Q |
1 |
tttatagtactttcaatcaaaaatttatttatagtacttgtatcaaaacataaataagtttatagtacttgattgtctattagctctggctaataatgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39935489 |
tttatagtactttcaatcaaaaatttatttatagtacttgtatcaaaacataaataagtttatagtacttgagtgtctattagctctggctaataatgca |
39935588 |
T |
|
| Q |
101 |
tattaaacgaagtacttttcgtccaaattgtattcagtgggaccataagaaaacccaactggtagcatgaagaatattttcccctaagtacagcagcaaa |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39935589 |
tattaaacaaagtacttttcgtccaaattgtattcagtgggaccataagaaaacccaactggtagcatgaagaatattttcccctaagtacagcagcaaa |
39935688 |
T |
|
| Q |
201 |
aaataatgaaatagagtaacccc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
39935689 |
aaataatgaaatagagtaacccc |
39935711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University