View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10271_high_56 (Length: 232)

Name: NF10271_high_56
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10271_high_56
NF10271_high_56
[»] chr4 (12 HSPs)
chr4 (1-227)||(31151127-31151355)
chr4 (5-147)||(31488783-31488925)
chr4 (5-147)||(31030508-31030650)
chr4 (5-147)||(31020627-31020769)
chr4 (5-141)||(31160029-31160165)
chr4 (1-141)||(31529284-31529424)
chr4 (1-142)||(31476203-31476344)
chr4 (5-141)||(31023534-31023670)
chr4 (4-153)||(31496132-31496281)
chr4 (7-147)||(31501308-31501448)
chr4 (11-69)||(31162413-31162471)
chr4 (20-141)||(31244241-31244362)
[»] chr6 (8 HSPs)
chr6 (5-143)||(12785695-12785833)
chr6 (7-136)||(12782258-12782387)
chr6 (5-143)||(12781505-12781643)
chr6 (78-155)||(33412747-33412824)
chr6 (115-161)||(9169557-9169603)
chr6 (55-155)||(33265688-33265788)
chr6 (55-155)||(33274832-33274932)
chr6 (47-155)||(33403409-33403517)
[»] scaffold1749 (1 HSPs)
scaffold1749 (38-156)||(935-1053)
[»] scaffold0428 (1 HSPs)
scaffold0428 (38-156)||(9696-9814)
[»] chr2 (1 HSPs)
chr2 (9-148)||(17437870-17438009)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 31151127 - 31151355
Alignment:
1 ttcaggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
31151127 ttcaggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatg-attttctttgcagggcagcaaaaagatgatcagtgaagttg 31151225  T
101 aggcgtgtatctttacctctaaagctgacaaacacgtcataataatttctccttggagatgacgagatgctgcta---ctgctgctgctgattttgatga 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
31151226 aggcgtgtatctttacctctaaagctgacaaacacgtcataataatttctccttggagatgacgagatgctgctactgctgctgctgctgattttgatga 31151325  T
198 tactattattactgctggtgatgtccatct 227  Q
    |||||||||||||||||||| || ||||||    
31151326 tactattattactgctggtgctggccatct 31151355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 31488925 - 31488783
Alignment:
5 ggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggc 104  Q
    |||||||| ||||||||||| |  |||||||| ||||| || || | |||||||| ||||||||| ||||||||||||||||||||||| ||||||| ||    
31488925 ggtgctatcgattcacctttttgaagcttagtgtcatctctaaacgcaaaaatgccttttctttgaagggcagcaaaaagatgatcagtaaagttgaagc 31488826  T
105 gtgtatctttacctctaaagctgacaaacacgtcataataatt 147  Q
    | ||||||| |||||| ||| ||||||||||||||||||||||    
31488825 gagtatcttcacctctgaaggtgacaaacacgtcataataatt 31488783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 5 - 147
Target Start/End: Original strand, 31030508 - 31030650
Alignment:
5 ggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggc 104  Q
    |||| ||||||||||||||| |  || ||||| || || || |||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||    
31030508 ggtggtatggattcacctttttgaagattagtgtcgtctctaaatgcaaaaatgccttttctttgaagggcagcaaaaagatgatcaatgaagttgaagc 31030607  T
105 gtgtatctttacctctaaagctgacaaacacgtcataataatt 147  Q
    | |||||||  ||||||||| |||||||||| |||||||||||    
31030608 gagtatcttcgcctctaaaggtgacaaacacatcataataatt 31030650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 147
Target Start/End: Original strand, 31020627 - 31020769
Alignment:
5 ggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggc 104  Q
    |||| ||||||||||||||| |  || ||||  || || || |||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||    
31020627 ggtggtatggattcacctttttgaagattagcgtcgtctctaaatgcaaaaatgccttttctttgaagggcagcaaaaagatgatcaatgaagttgaagc 31020726  T
105 gtgtatctttacctctaaagctgacaaacacgtcataataatt 147  Q
    | |||||||  ||||||||| |||||||||| |||||||||||    
31020727 gagtatcttcgcctctaaaggtgacaaacacatcataataatt 31020769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 31160029 - 31160165
Alignment:
5 ggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggc 104  Q
    |||||||||||||||||||||||||| |||| |||||||||||||| ||  |||| ||||||||| |||||||||||||||||||| |  || |||  |     
31160029 ggtgctatggattcacctttcttcaggttagaatcatccctgaatgcaacgatgccttttctttgaagggcagcaaaaagatgatcggcaaaattgttgt 31160128  T
105 gtgtatctttacctctaaagctgacaaacacgtcata 141  Q
    |||| ||||  ||||||||||| ||||| ||||||||    
31160129 gtgtgtcttggcctctaaagctcacaaaaacgtcata 31160165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 31529284 - 31529424
Alignment:
1 ttcaggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttg 100  Q
    |||||||||||| |||||||||||||| |||||||| ||||| || |||| || ||||| | || |||| ||||| | ||||||||||||||||||||||    
31529284 ttcaggtgctatagattcacctttcttaagcttagtgtcatctctaaatgcaacaatgcctcttatttggagggcggaaaaaagatgatcagtgaagttg 31529383  T
101 aggcgtgtatctttacctctaaagctgacaaacacgtcata 141  Q
    |  ||||| |||   ||||| ||||||| ||||||||||||    
31529384 aatcgtgtgtctgctcctctgaagctgataaacacgtcata 31529424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 31476344 - 31476203
Alignment:
1 ttcaggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttg 100  Q
    |||||||||||||||||||||||| |  || ||||| |||||||| |||| |||||  | ||||  ||  |||||| |||||||   ||||||||| |||    
31476344 ttcaggtgctatggattcacctttttgaagattagtgtcatccctaaatgcaaaaacacctttttcttcgagggcatcaaaaaggaaatcagtgaaattg 31476245  T
101 aggcgtgtatctttacctctaaagctgacaaacacgtcataa 142  Q
      ||| ||||||| |||||| ||||| |||||||||||||||    
31476244 ttgcgagtatcttcacctctgaagctcacaaacacgtcataa 31476203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 31023534 - 31023670
Alignment:
5 ggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggc 104  Q
    ||||| ||||||||||||||||| ||| | | ||| ||| |||||| ||  || | ||||||| | | || |||||||||||||||| ||||||||  ||    
31023534 ggtgcaatggattcacctttcttgagcattgcatcgtccttgaatgcaatgataccttttcttcggaaggaagcaaaaagatgatcaatgaagttgtagc 31023633  T
105 gtgtatctttacctctaaagctgacaaacacgtcata 141  Q
    | || ||||||||| | ||||| ||||||||||||||    
31023634 gagtgtctttacctttgaagctcacaaacacgtcata 31023670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 31496281 - 31496132
Alignment:
4 aggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgagg 103  Q
    |||| ||||||||||||||||    || ||||| ||||| || |||| | |||||| || ||| || | || | ||||||||||||||||||| |||  |    
31496281 aggtcctatggattcaccttttggaagattagtgtcatctctaaatgcagaaatgccttctctgtggaaggtatcaaaaagatgatcagtgaaattgttg 31496182  T
104 cgtgtatctttacctctaaagctgacaaacacgtcataataatttctcct 153  Q
    || || || | |||||||||| |||||||||||||||||| ||| |||||    
31496181 cgagtgtcctcacctctaaaggtgacaaacacgtcataatgattgctcct 31496132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 31501448 - 31501308
Alignment:
7 tgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgt 106  Q
    ||||||||||||||||||    || ||||| |||||||| |||| || ||||| || ||| |  | |||| |||||||||||| |||||| |||  |||     
31501448 tgctatggattcaccttttggaagattagtgtcatccctaaatgcaagaatgccttctctgttgaaggcatcaaaaagatgataagtgaaattgttgcga 31501349  T
107 gtatctttacctctaaagctgacaaacacgtcataataatt 147  Q
    || |||| |||||||||  |||||||| | |||||||||||    
31501348 gtgtcttcacctctaaaagtgacaaacgcatcataataatt 31501308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 31162413 - 31162471
Alignment:
11 atggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttg 69  Q
    |||||||||||||| || ||||||| ||||||||| |||| |||||| | |||||||||    
31162413 atggattcacctttgttgagcttagaatcatccctaaatgcaaaaataccttttctttg 31162471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 31244362 - 31244241
Alignment:
20 cctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctc 119  Q
    |||||||| ||||| |||||||||||||| | || ||||| |||| | || || |   ||||||| ||||||||||| |||  |||||| ||   |||||    
31244362 cctttcttgagctttgtatcatccctgaaggtaacaatgccttttttatggagagtgccaaaaaggtgatcagtgaaattgttgcgtgtgtcgccacctc 31244263  T
120 taaagctgacaaacacgtcata 141  Q
    ||||||| |||||||| |||||    
31244262 taaagctcacaaacacatcata 31244241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 12785695 - 12785833
Alignment:
5 ggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggc 104  Q
    ||||||||| |||||||||| || || ||||| ||||| ||||||| |  ||||| |  |||||| |||||||||||||||||||| ||||| |||| ||    
12785695 ggtgctatgaattcaccttttttaagtttagtgtcatctctgaatgcattaatgcctcgtctttgtagggcagcaaaaagatgatcggtgaaattgaagc 12785794  T
105 gtgtatctttacctctaaagctgacaaacacgtcataat 143  Q
    |||| |||   ||||||||||| ||||||||||||||||    
12785795 gtgtgtctgggcctctaaagctcacaaacacgtcataat 12785833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 12782258 - 12782387
Alignment:
7 tgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgt 106  Q
    ||||||||| | |||||| |  || ||||| ||||| ||||||| |||||| | ||||||||| |||||| ||||||||||||||||||| ||||  |||    
12782258 tgctatggaattacctttttgaagattagtgtcatctctgaatgtaaaaattctttttctttgaagggcaccaaaaagatgatcagtgaaattgaaacgt 12782357  T
107 gtatctttacctctaaagctgacaaacacg 136  Q
    || ||| | ||||| ||||| |||||||||    
12782358 gtgtctgtgcctctgaagctcacaaacacg 12782387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 12781505 - 12781643
Alignment:
5 ggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggc 104  Q
    ||||||||| |||| ||||| || || ||||| ||||| ||||||| |  ||||| |  |||||| ||||||||| ||| |||||| ||||| |||| ||    
12781505 ggtgctatgaattcgccttttttaagtttagtgtcatctctgaatgcattaatgcctcgtctttgtagggcagcacaaaaatgatcggtgaaattgaagc 12781604  T
105 gtgtatctttacctctaaagctgacaaacacgtcataat 143  Q
    |||| |||   ||||||||||| ||||||||||||||||    
12781605 gtgtgtctgggcctctaaagctcacaaacacgtcataat 12781643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 33412747 - 33412824
Alignment:
78 caaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataatttctccttg 155  Q
    ||||||||| ||||||||| |||  ||| || |||| |||||| ||| |||||||||| |||||||||||||| ||||    
33412747 caaaaagataatcagtgaaattgttgcgagtgtcttcacctctgaaggtgacaaacacatcataataatttcttcttg 33412824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 9169557 - 9169603
Alignment:
115 acctctaaagctgacaaacacgtcataataatttctccttggagatg 161  Q
    |||||||||| ||| |||||| ||||||| |||||||||||||||||    
9169557 acctctaaaggtgaaaaacacatcataatgatttctccttggagatg 9169603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 33265688 - 33265788
Alignment:
55 aatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataatttctcctt 154  Q
    ||||| |||| |||| |||||| ||||||||  ||| ||||| |||   || ||||||| |||||| ||| ||||||| || |||||||||||||| |||    
33265688 aatgccttttgtttgaagggcatcaaaaagaaaatctgtgaaattgttccgagtatcttcacctctgaaggtgacaaatacatcataataatttcttctt 33265787  T
155 g 155  Q
    |    
33265788 g 33265788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 33274832 - 33274932
Alignment:
55 aatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataatttctcctt 154  Q
    ||||| |||| |||| |||||| ||||||||  ||| ||||| |||   || ||||||| |||||| ||| ||||||| || |||||||||||||| |||    
33274832 aatgccttttgtttgaagggcatcaaaaagaaaatctgtgaaattgttccgagtatcttcacctctgaaggtgacaaatacatcataataatttcttctt 33274931  T
155 g 155  Q
    |    
33274932 g 33274932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 33403409 - 33403517
Alignment:
47 aatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataat 146  Q
    |||| |||||||| |||| |||  |||||| ||||||||  ||||||||| |||   || || |||| |||||||||| ||| |||||| || |||||||    
33403409 aatgcaaaaatgccttttgtttcaagggcatcaaaaagaaaatcagtgaaattgttccgagtgtcttcacctctaaaggtgataaacacatcgtaataat 33403508  T
147 ttctccttg 155  Q
    |||| ||||    
33403509 ttcttcttg 33403517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 935 - 1053
Alignment:
38 tcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgt 137  Q
    ||||||||||| | | |||| | ||||||||  |||||||||||||||  || |||||| |||  ||| ||||||| |||||| ||| ||||||||||||    
935 tcatccctgaaagcataaataccttttctttcaagggcagcaaaaagaaaattagtgaaattgttgcgagtatcttcacctctgaaggtgacaaacacgt 1034  T
138 cataataatttctccttgg 156  Q
    ||||| |||||||||||||    
1035 cataacaatttctccttgg 1053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 9696 - 9814
Alignment:
38 tcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgt 137  Q
    ||||||||||| | | |||| | ||||||||  |||||||||||||||  || |||||| |||  ||| ||||||| |||||| ||| ||||||||||||    
9696 tcatccctgaaagcataaataccttttctttcaagggcagcaaaaagaaaattagtgaaattgttgcgagtatcttcacctctgaaggtgacaaacacgt 9795  T
138 cataataatttctccttgg 156  Q
    ||||| |||||||||||||    
9796 cataacaatttctccttgg 9814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 17438009 - 17437870
Alignment:
9 ctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgt 108  Q
    |||||||||||||||| |  || ||||| ||||| |  |||| |||||||  ||||||||  |||||  ||||||||  ||||||||| |||  ||| ||    
17438009 ctatggattcacctttttgaagattagtgtcatctcgaaatgcaaaaatgtcttttctttcaagggcgtcaaaaagaaaatcagtgaaattgttgcgagt 17437910  T
109 atctttacctctaaagctgacaaacacgtcataataattt 148  Q
    ||||| |||||||||| |||||||||| ||||||| ||||    
17437909 atcttcacctctaaaggtgacaaacacatcataatgattt 17437870  T

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