View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10271_high_7 (Length: 452)

Name: NF10271_high_7
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10271_high_7
NF10271_high_7
[»] chr4 (12 HSPs)
chr4 (128-441)||(10346317-10346626)
chr4 (172-442)||(10316606-10316880)
chr4 (284-441)||(10333439-10333596)
chr4 (1-177)||(10317220-10317381)
chr4 (1-104)||(10346627-10346730)
chr4 (76-142)||(10333714-10333780)
chr4 (321-395)||(10351143-10351215)
chr4 (343-432)||(10216878-10216962)
chr4 (288-432)||(10243203-10243342)
chr4 (329-395)||(10360625-10360692)
chr4 (294-375)||(10275002-10275083)
chr4 (1-33)||(10333787-10333819)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 128 - 441
Target Start/End: Complemental strand, 10346626 - 10346317
Alignment:
Q  128 tttctttaccggtggcttgaaaacggagggcttctcaacttgtggtttgtacaccgatgatttttcaaccggcatctttttcatcgaaggtgtgtacact 227  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  10346626 tttctttaccggtggcttgaaaacggagggcttctcaacttatggtttgtacactgatgatttttcaaccggcatctttttgatcgaaggtgtgtacact 10346527  T
Q  228 gttaacttcttatctggtggctgccgcactccataagatgttggacgtggtccatattgtgcaagaccctgagggatgacaatgagaacaataagaagca 327  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10346526 gttaacttcttatctggtggctgccgcactccataaggtgttgggcgtggtccatattgtgcaaaaccctgagggatgacaatgagaacaataagaagca 10346427  T
Q  328 atactaggaagcgaaaggaagccatattagtttgatttttgagtttggtacataaaacacaagagtgatgactagctgcttttatactagtcttggtctt 427  Q
    | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||| ||||||||||||||||||||    
T  10346426 acactaggaagcgaaaggaagccatcttagtttgatttttgagtttggtacataaaacacaagag---tgactagctgc-tttatactagtcttggtctt 10346331  T
Q  428 tgtgagtcctctct 441  Q
    ||||||||| ||||    
T  10346330 tgtgagtccactct 10346317  T

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Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 172 - 442
Target Start/End: Complemental strand, 10316880 - 10316606
Alignment:
Q  172 gtttgtacaccgatgatttttcaaccggcatctttttcatcgaaggtgtgtacactgttaacttcttatctggtggctgccgcactccataagatgttgg 271  Q
    |||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10316880 gtttgtacactgatggtttttcaaccggcgtctttttcatcgaaggtgtgtacactgttaacttcttatctggtggctgccgcactccataaggtgttgg 10316781  T
Q  272 acgtggtccatattgtgcaagaccctgagggatgacaatgagaacaataagaagcaatactaggaagcgaaaggaa----gccatattagtttgattttt 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    ||||| ||||| ||||||||    
T  10316780 acgtggtccatattgtgcaagaccctgagggatgacaatgagaacaataagaagcaacactaggaagcgaaaggaagccagccatcttagtatgattttt 10316681  T
Q  368 gagtttggtacataaaacacaagagtgatgactagctgcttttatactagtcttggtctttgtgagtcctctctg 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10316680 gagtttggtacataaaacacaagagtgatgactagctgcttttatactagtcttggtctttgtgagtcctctctg 10316606  T

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Target: chr4; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 284 - 441
Target Start/End: Complemental strand, 10333596 - 10333439
Alignment:
Q  284 ttgtgcaagaccctgagggatgacaatgagaacaataagaagcaatactaggaagcgaaaggaagccatattagtttgatttttgagtttggtacataaa 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10333596 ttgtgcaagaccctgagggatgacaatgagaacaataagaagcaacactaggaagcgaaaggaagccatattagtttgatttttgagtttggtacataaa 10333497  T
Q  384 acacaagagtgatgactagctgcttttatactagtcttggtctttgtgagtcctctct 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10333496 acacaagagtgatgactagctgcttttatactagtcttggtctttgtgagtccactct 10333439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 10317381 - 10317220
Alignment:
Q  1 ttaggccatattttcttaatagcattccttagacatgagtacaatcatctgcataggggtacttaatttggtggcgacgcagcttttaatatcaaggctt 100  Q
    ||||| ||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10317381 ttagggcatattttcttaatagcattccttagaaatgagtgccatcatctgcataggggtacttaatttggtggcgacgcagcttttaatatcaaagctt 10317282  T
Q  101 ctcaacccgtggtttgcggacatgtggtttctttaccggtggcttgaaaacggagggcttctcaacttgtggtttgt 177  Q
    |||||||||||               |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10317281 ctcaacccgtg---------------gtttctttaccggtggcttgaaaacggagggcttctcaacttatggtttgt 10317220  T

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Target: chr4; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 10346730 - 10346627
Alignment:
Q  1 ttaggccatattttcttaatagcattccttagacatgagtacaatcatctgcataggggtacttaatttggtggcgacgcagcttttaatatcaaggctt 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  10346730 ttaggccatattttcttaatagcattccttagaaatgagtacaatcatctgcataggggtacttaatttggtggtgacgcggcttctaatatcaaggctt 10346631  T
Q  101 ctca 104  Q
    ||||    
T  10346630 ctca 10346627  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 10333780 - 10333714
Alignment:
Q  76 gacgcagcttttaatatcaaggcttctcaacccgtggtttgcggacatgtggtttctttaccggtgg 142  Q
    ||||| |||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  10333780 gacgcggcttctaatatcaaggcttctcaacctgtggtttgcagacatgtggtttctttaccggtgg 10333714  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 321 - 395
Target Start/End: Complemental strand, 10351215 - 10351143
Alignment:
Q  321 agaagcaatactaggaagcgaaaggaagccatattagtttgatttttgagtttggtacataaaacacaagagtga 395  Q
    ||||| ||||| |||||||||||||||||||| |||||  |||||||||||||||| | ||||||||||||||||    
T  10351215 agaagtaatacaaggaagcgaaaggaagccatcttagt--gatttttgagtttggtgcttaaaacacaagagtga 10351143  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 432
Target Start/End: Complemental strand, 10216962 - 10216878
Alignment:
Q  343 aggaagccatattagtttgatttttgagtttggtacataaaacacaagagtgatgactagctgcttttatactagtcttggtctttgtga 432  Q
    |||||||||| |||||  || || |||||||||| |||||||||||||||   ||||| |||||||||||||||||| || |||| ||||    
T  10216962 aggaagccatgttagt--gacttatgagtttggtgcataaaacacaagag---tgacttgctgcttttatactagtcgtgatcttagtga 10216878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 432
Target Start/End: Complemental strand, 10243342 - 10243203
Alignment:
Q  288 gcaagaccctgagggatgacaatgagaacaataagaagcaatactaggaagcgaaaggaagccatattagtttgatttttgagtttggtacataaaacac 387  Q
    |||||||||||||| ||| |||  ||| ||| ||||||||  |||||||||    |||||||||| |||||  || || |||||||||| || |||||||    
T  10243342 gcaagaccctgaggaatggcaaatagagcaaaaagaagcagcactaggaagtttgaggaagccatgttagt--gacttatgagtttggtgcagaaaacac 10243245  T
Q  388 aagagtgatgactagctgcttttatactagtcttggtctttgtga 432  Q
    ||||||||   ||  || |||||||||||||| || |||||||||    
T  10243244 aagagtga---cttcctccttttatactagtcgtgatctttgtga 10243203  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 395
Target Start/End: Complemental strand, 10360692 - 10360625
Alignment:
Q  329 tactaggaagcgaaaggaagccatattagtt-tgatttttgagtttggtacataaaacacaagagtga 395  Q
    ||||||||||| |||||||||||||||  |  ||||||||| ||||||| |||| |||||||||||||    
T  10360692 tactaggaagccaaaggaagccatattcttagtgatttttgtgtttggtgcatagaacacaagagtga 10360625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 10275083 - 10275002
Alignment:
Q  294 ccctgagggatgacaatgagaacaataagaagcaatactaggaagcgaaaggaagccatattagtttgatttttgagtttgg 375  Q
    |||| |||||| ||||  ||||||| |||  |||| |||||||||| |||| ||||||| | ||| ||||||||||||||||    
T  10275083 cccttagggataacaaacagaacaagaaggggcaacactaggaagctaaagaaagccatctaagtatgatttttgagtttgg 10275002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 10333819 - 10333787
Alignment:
Q  1 ttaggccatattttcttaatagcattccttaga 33  Q
    ||||| |||||||||||||||||||||||||||    
T  10333819 ttagggcatattttcttaatagcattccttaga 10333787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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