View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10271_high_71 (Length: 205)

Name: NF10271_high_71
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10271_high_71
NF10271_high_71
[»] chr6 (16 HSPs)
chr6 (26-192)||(31566567-31566732)
chr6 (31-195)||(33390542-33390705)
chr6 (46-195)||(33306955-33307103)
chr6 (31-195)||(33642065-33642228)
chr6 (47-182)||(33288056-33288191)
chr6 (29-195)||(9169327-9169492)
chr6 (29-182)||(33060036-33060189)
chr6 (46-182)||(33403092-33403228)
chr6 (29-182)||(33360979-33361132)
chr6 (46-195)||(33412387-33412535)
chr6 (29-195)||(33265351-33265516)
chr6 (29-195)||(33274495-33274660)
chr6 (28-90)||(12781322-12781384)
chr6 (28-90)||(12782073-12782135)
chr6 (48-90)||(12785512-12785554)
chr6 (48-90)||(12786252-12786294)
[»] chr2 (1 HSPs)
chr2 (29-182)||(17438135-17438288)
[»] chr4 (11 HSPs)
chr4 (31-186)||(31496404-31496559)
chr4 (31-180)||(31501574-31501723)
chr4 (1-139)||(31529056-31529194)
chr4 (37-180)||(31162133-31162276)
chr4 (37-180)||(31476470-31476613)
chr4 (28-182)||(31489046-31489200)
chr4 (25-182)||(31020352-31020509)
chr4 (46-121)||(31482318-31482393)
chr4 (25-182)||(31030233-31030390)
chr4 (25-75)||(31159861-31159911)
chr4 (26-183)||(31150855-31151012)
[»] scaffold1749 (1 HSPs)
scaffold1749 (26-182)||(627-783)
[»] scaffold0428 (1 HSPs)
scaffold0428 (26-182)||(9388-9544)


Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 31566567 - 31566732
Alignment:
Q  26 tctggaaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaa 125  Q
    |||| ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31566567 tctgaaaaacatgttcttcttgttttctatgatgttgatccttctgaggttcgaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaa 31566666  T
Q  126 gattccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtggctgagtatct 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31566667 gattccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtggc-gagtatct 31566732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 31 - 195
Target Start/End: Complemental strand, 33390705 - 33390542
Alignment:
Q  31 aaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattc 130  Q
    ||||| |||||| | |||||| ||||||||||||||||||||||||| |||||||||||| ||||||  | ||||||||| |||||||||||||||||||    
T  33390705 aaaacttgttcttcctgttttttatgatgttgatccttctgaggttcgaaagcaaagtggaatttatgataaagcttttgtcaaacatgaacaaagattc 33390606  T
Q  131 cgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtggctgagtatctctg 195  Q
    | |||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  33390605 caacaaaactctcagatggtgtcaagatggagagaagctctaaaacaagtgg-ggagtatctctg 33390542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 46 - 195
Target Start/End: Complemental strand, 33307103 - 33306955
Alignment:
Q  46 tgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcag 145  Q
    |||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||||| |||| |||||||||||||||||||| |||||||| | ||    
T  33307103 tgttttttatgatgttgatccttctgtggttcgaaagcaaagtgggatttattgtgaagcctttgtcaaacatgaacaaagattccaacaagactttgag 33307004  T
Q  146 atggtgtcaagatggagagaagctctaaaacaagtggctgagtatctctg 195  Q
    ||||||||||||||||| |||||||||||||| ||||  |||||||||||    
T  33307003 atggtgtcaagatggagggaagctctaaaacatgtgg-ggagtatctctg 33306955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 31 - 195
Target Start/End: Original strand, 33642065 - 33642228
Alignment:
Q  31 aaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattc 130  Q
    ||||| |||||| | | |||| ||||||||||||||||||||||| | |||||||||||| |||||||  |||||||||| |||||||||||||||||||    
T  33642065 aaaacatgttcttcctattttttatgatgttgatccttctgaggtacgaaagcaaagtggaatttattgggaagcttttgtcaaacatgaacaaagattc 33642164  T
Q  131 cgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtggctgagtatctctg 195  Q
    | |||||||| ||| ||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  33642165 caacaagactttcaaatggtgtcaagatggagggaagctctaaaacaagtgg-ggagtatctctg 33642228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 47 - 182
Target Start/End: Complemental strand, 33288191 - 33288056
Alignment:
Q  47 gttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcaga 146  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||  |||||| ||| ||| ||||||||||| ||||| ||||||||||||||    
T  33288191 gttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatggtgaagcctttaccatacatgaacaaacattccaacaagactctcaga 33288092  T
Q  147 tggtgtcaagatggagagaagctctaaaacaagtgg 182  Q
    |||||||||||||||| ||||| |||||||||||||    
T  33288091 tggtgtcaagatggagggaagccctaaaacaagtgg 33288056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 29 - 195
Target Start/End: Complemental strand, 9169492 - 9169327
Alignment:
Q  29 ggaaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagat 128  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  9169492 ggaaaacatgttcttcttgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttattgtgaagcatttgccaaacatgaacaaagat 9169393  T
Q  129 tccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtggctgagtatctctg 195  Q
    ||  | |||| ||||| ||||||||| |||||||  ||| | ||||||||||||  |||||||||||    
T  9169392 tcaaataagattctcacatggtgtcaggatggaggaaaggtttaaaacaagtgg-ggagtatctctg 9169327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 182
Target Start/End: Complemental strand, 33060189 - 33060036
Alignment:
Q  29 ggaaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagat 128  Q
    ||||||| |||||| | |||||||||||||||||||||||||||||| |  ||||||||||| ||||||  ||||||||||| |||||||||||||||||    
T  33060189 ggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcggaagcaaagtggaatttatagtgaagcttttgtcaaacatgaacaaagat 33060090  T
Q  129 tccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtgg 182  Q
    ||| ||||||||||  || ||||||||||||||||||||||||| | |||||||    
T  33060089 tccaacaagactctatgaaggtgtcaagatggagagaagctctagagcaagtgg 33060036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 33403228 - 33403092
Alignment:
Q  46 tgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcag 145  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| |||| ||| |||||| ||||||||| ||||| || | ||    
T  33403228 tgttttctatgatgttgatccttctgaggttcgaaagcaaagtggtatttattgtgaagcctttgtcaagcatgaaaaaagattccaacaaggctttgag 33403129  T
Q  146 atggtgtcaagatggagagaagctctaaaacaagtgg 182  Q
    ||||||||||||||||| |||||||||||||||||||    
T  33403128 atggtgtcaagatggagggaagctctaaaacaagtgg 33403092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 182
Target Start/End: Complemental strand, 33361132 - 33360979
Alignment:
Q  29 ggaaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagat 128  Q
    ||||||| |||||| | |||||||||||||||||||||||||||||| |  |||||||||| |||||||  ||||||||||| |||||||||||||||||    
T  33361132 ggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcggaagcaaagtgagatttatagtgaagcttttgtcaaacatgaacaaagat 33361033  T
Q  129 tccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtgg 182  Q
    ||| |||||||||| ||| |||||||| |||||| ||||||||| | |||||||    
T  33361032 tccaacaagactctaagaaggtgtcaatatggagggaagctctagagcaagtgg 33360979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 195
Target Start/End: Complemental strand, 33412535 - 33412387
Alignment:
Q  46 tgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcag 145  Q
    |||||| |||||| |||||||||||||||| |  ||||||||||||||||||| |||| |||||| |||||||||||||||||||| ||||||| ||||     
T  33412535 tgttttttatgatattgatccttctgaggtgcggaagcaaagtgggatttattgtgaatcttttgtcaaacatgaacaaagattccaacaagaccctcat 33412436  T
Q  146 atggtgtcaagatggagagaagctctaaaacaagtggctgagtatctctg 195  Q
    | ||||||||||||||| |||||| |||| |||||||  |||||||||||    
T  33412435 aaggtgtcaagatggagggaagctttaaaccaagtgg-ggagtatctctg 33412387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 29 - 195
Target Start/End: Complemental strand, 33265516 - 33265351
Alignment:
Q  29 ggaaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagat 128  Q
    ||||||| |||||| |  |||||||||||||||||||| ||||| ||   |||||||||||||||||||  |||||| |||  |||||||||||||||||    
T  33265516 ggaaaacatgttcttccagttttctatgatgttgatccctctgatgtgagaaagcaaagtgggatttatggtgaagcctttatcaaacatgaacaaagat 33265417  T
Q  129 tccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtggctgagtatctctg 195  Q
    ||| ||||||   ||||| |||||||| |||||| || ||||||||||||||||  |||||||||||    
T  33265416 tccaacaagaacatcagaaggtgtcaaaatggagggacgctctaaaacaagtgg-ggagtatctctg 33265351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 29 - 195
Target Start/End: Complemental strand, 33274660 - 33274495
Alignment:
Q  29 ggaaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagat 128  Q
    ||||||| |||||| |  |||||||||||||||||||| ||||| ||   |||||||||||||||||||  |||||| |||  |||||||||||||||||    
T  33274660 ggaaaacatgttcttccagttttctatgatgttgatccctctgatgtgagaaagcaaagtgggatttatggtgaagcctttatcaaacatgaacaaagat 33274561  T
Q  129 tccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtggctgagtatctctg 195  Q
    ||| ||||||   ||||| |||||||| |||||| || ||||||||||||||||  |||||||||||    
T  33274560 tccaacaagaacatcagaaggtgtcaaaatggagggacgctctaaaacaagtgg-ggagtatctctg 33274495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 12781384 - 12781322
Alignment:
Q  28 tggaaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgg 90  Q
    ||||||||  ||||| | |||||||||||||||||||||||||||||| ||||||||||||||    
T  12781384 tggaaaacacgttcttcctgttttctatgatgttgatccttctgaggtacaaaagcaaagtgg 12781322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 12782135 - 12782073
Alignment:
Q  28 tggaaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgg 90  Q
    ||||||||| ||||| | |||||| ||||||||||||| ||||||||| | ||||||||||||    
T  12782135 tggaaaacgcgttctgcctgttttttatgatgttgatctttctgaggtgcgaaagcaaagtgg 12782073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 12785554 - 12785512
Alignment:
Q  48 ttttctatgatgttgatccttctgaggttcaaaagcaaagtgg 90  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  12785554 ttttttatgatgttgatccttctgaggtacaaaagcaaagtgg 12785512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 12786294 - 12786252
Alignment:
Q  48 ttttctatgatgttgatccttctgaggttcaaaagcaaagtgg 90  Q
    |||| ||||||||||||||||||||||| | ||||||||||||    
T  12786294 ttttttatgatgttgatccttctgaggtgcgaaagcaaagtgg 12786252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 17438135 - 17438288
Alignment:
Q  29 ggaaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagat 128  Q
    ||||||| |||||| | |||||||||||||||||||||||||||||| | |||||||||||||||||||  ||||||||||| |||||||||||||||||    
T  17438135 ggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaagcttttgtcaaacatgaacaaagat 17438234  T
Q  129 tccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtgg 182  Q
    ||| |||||||  ||||| ||||||||||||||| ||||||||||| |||||||    
T  17438235 tccaacaagaccttcagaaggtgtcaagatggagggaagctctaaagcaagtgg 17438288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 31496404 - 31496559
Alignment:
Q  31 aaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattc 130  Q
    ||||| |||||| | |||||||||||||||||| ||||||  ||| | |||||||||||| ||||||  |||||| |||| |||||||||||||||||||    
T  31496404 aaaacatgttctgcctgttttctatgatgttgacccttctatggtgcgaaagcaaagtggaatttatggtgaagcatttgtcaaacatgaacaaagattc 31496503  T
Q  131 cgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtggctga 186  Q
    | |||||||||||||||||||  ||||||||| |||||||||| |||||| |||||    
T  31496504 caacaagactctcagatggtgcaaagatggagggaagctctaatacaagtcgctga 31496559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 31501574 - 31501723
Alignment:
Q  31 aaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattc 130  Q
    ||||| |||||| | |||||||||||||||||||||| | | ||| | |||||||||||||||||||| |||||| |||| |||||||||||||| ||||    
T  31501574 aaaacatgttctgcctgttttctatgatgttgatcctcccgtggtgcgaaagcaaagtgggatttattgtgaagcatttgtcaaacatgaacaaatattc 31501673  T
Q  131 cgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagt 180  Q
    | |||||||||||||||||||  ||||||||| |||||||| | ||||||    
T  31501674 caacaagactctcagatggtgctaagatggagggaagctctgacacaagt 31501723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 31529194 - 31529056
Alignment:
Q  1 atacatccttcattgcgtacaacgttctggaaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattct 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| | |||||||||||||| ||||       
T  31529194 atacatccttcattgcgtacaactttctggaaaacgtgttctccctgttttctatgatgttgatccttccgaggtgcgaaagcaaagtgggagttataaa 31529095  T
Q  101 gaagcttttgccaaacatgaacaaagattccgacaagac 139  Q
     |||| |||||| |||||||  ||||||||  |||||||    
T  31529094 aaagcatttgcccaacatgaggaaagattcaaacaagac 31529056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 31162276 - 31162133
Alignment:
Q  37 tgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaa 136  Q
    |||||| | ||||||||||||||||||||||| |||| |   | | ||||  || | ||||  |||||| |||  |||||||||||||||||||| ||||    
T  31162276 tgttctgcctgttttctatgatgttgatccttatgagatgagatatcaaaaaggaaattatgttgaagcctttttcaaacatgaacaaagattccaacaa 31162177  T
Q  137 gactctcagatggtgtcaagatggagagaagctctaaaacaagt 180  Q
    |||||| ||||||||  ||||||||| ||||||| || ||||||    
T  31162176 gactctgagatggtgcaaagatggagggaagctcaaacacaagt 31162133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 31476470 - 31476613
Alignment:
Q  37 tgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaa 136  Q
    |||||| | ||| |||||||||||||||||||||  ||| | |||||||| ||||||||||  |||||| |||| | |||||| ||| ||||||  ||||    
T  31476470 tgttctacctgtgttctatgatgttgatccttctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatggacacagattcaaacaa 31476569  T
Q  137 gactctcagatggtgtcaagatggagagaagctctaaaacaagt 180  Q
    |||||||| ||||||  | ||||||| | |||||| | ||||||    
T  31476570 gactctcaaatggtgctacgatggagggcagctctgacacaagt 31476613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 31489046 - 31489200
Alignment:
Q  28 tggaaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaaga 127  Q
    ||||| ||||||||| | |||||| |||||||||||||||||||||||   | | ||||  || |||||   |||||| ||| ||||||||||||||| |    
T  31489046 tggaagacgtgttcttcctgttttttatgatgttgatccttctgaggtgagacatcaaaaaggaatttacggtgaagccttttccaaacatgaacaaaca 31489145  T
Q  128 ttccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtgg 182  Q
    |||| ||| ||||||||  ||||   ||||||||| |||||||| | ||||||||    
T  31489146 ttccaacatgactctcatgtggtacaaagatggagggaagctctgacacaagtgg 31489200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 182
Target Start/End: Complemental strand, 31020509 - 31020352
Alignment:
Q  25 ttctggaaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaa 124  Q
    |||||||| ||||||||| | |||||| |||||||||||||||||||||||   | | ||||  || |||||   |||||| ||| ||||||||||||||    
T  31020509 ttctggaagacgtgttcttcctgttttttatgatgttgatccttctgaggtgagacatcaaaaaggaatttacggtgaagccttttccaaacatgaacaa 31020410  T
Q  125 agattccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtgg 182  Q
    | ||||| ||| ||||||||  ||||   ||| ||||| |||||||| | ||||||||    
T  31020409 acattccaacatgactctcatgtggtacaaagttggagggaagctctgacacaagtgg 31020352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 31482318 - 31482393
Alignment:
Q  46 tgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaa 121  Q
    |||||||||||||||  |||| |||||||| | |||||||||||||| |||| || |||| |||||||||||||||    
T  31482318 tgttttctatgatgtcaatccatctgaggtacgaaagcaaagtgggagttatgctaaagcctttgccaaacatgaa 31482393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 182
Target Start/End: Complemental strand, 31030390 - 31030233
Alignment:
Q  25 ttctggaaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaa 124  Q
    |||||||| ||||||||| | |||||| |||||||||||||||||||||||   | | ||||  || |||||   |||||| ||| ||||||||||||||    
T  31030390 ttctggaagacgtgttcttcctgttttttatgatgttgatccttctgaggtgagacatcaaaaaggaatttacggtgaagccttttccaaacatgaacaa 31030291  T
Q  125 agattccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtgg 182  Q
    | ||||| ||| || |||||  ||||   ||| ||||| |||||||| | ||||||||    
T  31030290 acattccaacatgaatctcatgtggtacaaagttggagggaagctctgacacaagtgg 31030233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 31159911 - 31159861
Alignment:
Q  25 ttctggaaaacgtgttctccttgttttctatgatgttgatccttctgaggt 75  Q
    ||||||||  |||||||||| | ||||||||||||||||||||||||||||    
T  31159911 ttctggaactcgtgttctccctattttctatgatgttgatccttctgaggt 31159861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 31151012 - 31150855
Alignment:
Q  26 tctggaaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaa 125  Q
    ||||||||||||||||| | ||| ||||||||||||||||| || ||||| | | | ||||  ||   |||| ||||||| || || ||||||||| |||    
T  31151012 tctggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaa 31150913  T
Q  126 gattccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtggc 183  Q
    |||||| |||| ||| | | || |||  ||||||||| ||||| || | |||||||||    
T  31150912 gattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggc 31150855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 26 - 182
Target Start/End: Complemental strand, 783 - 627
Alignment:
Q  26 tctggaaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaa 125  Q
    |||||||||  |||||| | | ||||||||| ||| ||||||||||||||  |||||||||||||||||||||  || | ||||||||||||||||||||    
T  783 tctggaaaatatgttcttcctattttctatggtgtcgatccttctgaggtaaaaaagcaaagtgggatttattgggacgattttgccaaacatgaacaaa 684  T
Q  126 gattccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtgg 182  Q
    |||||  ||||||| |||| | ||||||||||||||| ||||||||||| |||||||    
T  683 gattcaaacaagaccctcataaggtgtcaagatggagggaagctctaaaccaagtgg 627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 26 - 182
Target Start/End: Complemental strand, 9544 - 9388
Alignment:
Q  26 tctggaaaacgtgttctccttgttttctatgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaa 125  Q
    |||||||||  |||||| | | ||||||||| ||| ||||||||||||||  |||||||||||||||||||||  || | ||||||||||||||||||||    
T  9544 tctggaaaatatgttcttcctattttctatggtgtcgatccttctgaggtaaaaaagcaaagtgggatttattgggacgattttgccaaacatgaacaaa 9445  T
Q  126 gattccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtgg 182  Q
    |||||  ||||||| |||| | ||||||||||||||| ||||||||||| |||||||    
T  9444 gattcaaacaagaccctcataaggtgtcaagatggagggaagctctaaaccaagtgg 9388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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