View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10271_low_1 (Length: 718)

Name: NF10271_low_1
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10271_low_1
NF10271_low_1
[»] chr1 (6 HSPs)
chr1 (16-683)||(9804675-9805341)
chr1 (75-507)||(9817777-9818211)
chr1 (16-356)||(9806455-9806792)
chr1 (568-711)||(9817550-9817693)
chr1 (565-704)||(9817438-9817577)
chr1 (575-683)||(9817341-9817448)
[»] scaffold0432 (3 HSPs)
scaffold0432 (13-504)||(11788-12285)
scaffold0432 (561-711)||(11558-11708)
scaffold0432 (565-683)||(11467-11585)
[»] chr7 (1 HSPs)
chr7 (353-507)||(42778749-42778900)
[»] chr8 (1 HSPs)
chr8 (41-132)||(2371052-2371144)


Alignment Details
Target: chr1 (Bit Score: 559; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 16 - 683
Target Start/End: Complemental strand, 9805341 - 9804675
Alignment:
Q  16 gacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatttttgttttattcggttattaaaata 115  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9805341 gacatcattgaacaggacaagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattttttttttattcggttattaaaata 9805242  T
Q  116 tgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttgaa 215  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |  |||||||||||||||||||||||||||||||||    
T  9805241 tgtacttgtatttgttattttctatttacttctagtacacattttatattaaatttttgtacataggaatgcatcaaagggaaaaggaattcttgttgaa 9805142  T
Q  216 caaaatgaaaagcaccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagtataagaaatccatctgtggataataaattaa 315  Q
    |||||||||||||||  |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9805141 caaaatgaaaagcactggtgatgaggaggaagactcttccccaaaggtaagatggggaatttgaagagtataagaaatccatgtgtggataataaattaa 9805042  T
Q  316 aataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnn 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||       
T  9805041 aataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaatttgagaaagacatgcaaaatgatctagataaa 9804942  T
Q  416 nnnntatatgaaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataaccattcatgag 515  Q
         |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9804941 aaaa-atatgaaaaaagtttggattacctttcttgcccaaataatgaaacgaggttgaactttcatgaaaactccatcaaaagagataaccattcatgag 9804843  T
Q  516 aggttggcaacggcgactggtcgatgtcgatctcagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggtt 615  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9804842 aggttggcaacggcgactgatcgatgtcgatctcagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgcttggagagaggtt 9804743  T
Q  616 ggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgaggatgggagga 683  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9804742 ggcaacagcgattgagggagaaaattgtgtttagggtttcaagagaatgagaaatgaggatgggagga 9804675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 75 - 507
Target Start/End: Complemental strand, 9818211 - 9817777
Alignment:
Q  75 aaggtatattgtgattt--ttgttttattcggttattaaaatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttt 172  Q
    |||||||||||||||||  || |||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  9818211 aaggtatattgtgatttattttttttatacggttattaaattatgtacttgtatttgttattttctatttacttctagtacacaatttatattaaatttt 9818112  T
Q  173 tgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcaccagtgatgagcaggaagactcttccccaaaagtaagatgggg 272  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||    
T  9818111 tgtacacaagaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcactagtgatgaggaggaagactcttccccaaaggtaagatgggg 9818012  T
Q  273 aatttgaagagt--ataagaaatccatctgtggataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaa 370  Q
    ||||||||||||  | ||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  9818011 aatttgaagagtagaaaagaaatccatgtgtagataataaattaaaataaaatccatgtatttatcacatagtatgatgtttgaaatcactcacataaaa 9817912  T
Q  371 gacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcccaaataatgaaacgaggt 470  Q
    ||||||||||||| ||||||||||||||||||||||| ||||        || || ||||||||| ||||||||||||||||||||||||| ||||||||    
T  9817911 gacaaccacaaatcagagaaagacatgcaaaatgatctagataaaaaa--atgtggaaaaagttttgattaccttttttgcccaaataatggaacgaggt 9817814  T
Q  471 tgaagtttcatgaaaactccatcaaaagagataacca 507  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9817813 tgaagtttcatgaaaattccatcaaaagagataacca 9817777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 9806455 - 9806792
Alignment:
Q  16 gacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatt--tttgttttattcggttattaaaa 113  Q
    |||||||||||||| || |||||||||||||||||| || ||| |||||||||||||||||||||||||||||||  ||| ||||| | ||||||| |||    
T  9806455 gacatcattgaacaagacaagatggaaggtatttcacgtgctcacgaaaagggagaatcaaggtatattgtgatttatttattttagttggttattcaaa 9806554  T
Q  114 tatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttg 213  Q
    ||||||||||| |||||||||| ||||||  ||||| |||||||||||| || |||||||||||||            ||||||||||||||| ||||||    
T  9806555 tatgtacttgtgtttgttattttctatttgtttctaatacacattttatatttaatttttgtacac------------aagggaaaaggaattattgttg 9806642  T
Q  214 aacaaaatgaaaag-----caccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagt---ataagaaatccatctgtggat 305  Q
    ||||||||||| ||     ||| |  || ||| ||||||||| || ||| |||||||| |||||||||||||||||   ||||||| | ||| | |        
T  9806643 aacaaaatgaagaggaggccactatagaagaggaggaagactatt-cccgaaagtaaggtggggaatttgaagagtagaataagaagttcatgtctaccc 9806741  T
Q  306 aataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaa 356  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9806742 aataaaataaaataaaatccatgtatttattacatagtatgatgtttgaaa 9806792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 568 - 711
Target Start/End: Complemental strand, 9817693 - 9817550
Alignment:
Q  568 ttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgaga 667  Q
    ||||||||||||||||||||||||||  ||| || |||||||||||||| ||||||||  |||||| ||||||| ||||||||||||||||| |||||||    
T  9817693 ttttttctgatcgatgtcgatctcagcaatgttggtaggagagaggttgtcaacggcggatgagggggaaaattgtgtttagggtttcaagataatgaga 9817594  T
Q  668 aatgaggatgggaggattattttgtttgattgatgtccatctca 711  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  9817593 aatgaggatgggaggattcttttgtttgattgatgtcgatctca 9817550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 565 - 704
Target Start/End: Complemental strand, 9817577 - 9817438
Alignment:
Q  565 ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg 664  Q
    ||||||| | |||| |||||||||||||   |||||| ||||||||||||||||| | |||  |||||||||||| ||||||||||||||||| ||||||    
T  9817577 ttcttttgtttgattgatgtcgatctcacctatggtggtaggagagaggttggcagcagcggctgagggagaaaactttgtttagggtttcaaaagaatg 9817478  T
Q  665 agaaatgaggatgggaggattattttgtttgattgatgtc 704  Q
    |||||||||||| |||||||| ||||| ||||| ||||||    
T  9817477 agaaatgaggattggaggattcttttgattgatcgatgtc 9817438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 575 - 683
Target Start/End: Complemental strand, 9817448 - 9817341
Alignment:
Q  575 tgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgagg 674  Q
    ||||||||||||||| ||| ||||||| || |||||||||||||| |||||  |||||||||||| | ||||||||||||| ||||||||||||||||||    
T  9817448 tgatcgatgtcgatc-cagcgatggtggtatgagagaggttggcagcggcggctgagggagaaaactgtgtttagggtttctagagaatgagaaatgagg 9817350  T
Q  675 atgggagga 683  Q
    |||||||||    
T  9817349 atgggagga 9817341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 215; Significance: 1e-117; HSPs: 3)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 13 - 504
Target Start/End: Complemental strand, 12285 - 11788
Alignment:
Q  13 atggacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaa 111  Q
    |||||||||||||| || || ||||||||||||||| |||||||||  |||||||| ||||||| |||| ||||||||| || ||||| | ||||||| |    
T  12285 atggacatcattgatcatgacaagatggaaggtattccatgtactcatgaaaagggggaatcaacgtattttgtgatttatttttttagttggttattca 12186  T
Q  112 aatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgt 211  Q
    | ||||||||| | ||||||||||  |||||||||||||||| |||||||| ||||||||| ||||||   |||||| | |||||| |||||||||||||    
T  12185 attatgtacttatgtttgttattttatatttacttctagtac-cattttatattaaattttggtacacgataatgcagcgaagggagaaggaattcttgt 12087  T
Q  212 tgaacaaaatgaaaag-----caccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagta---taagaaatccatctgtgg 303  Q
    ||||||||||||||||     ||| |||||| |  ||||||||||||||| ||| ||||||||||||||||||||||||   ||||||||| || |||      
T  12086 tgaacaaaatgaaaaggatgccactagtgataacgaggaagactcttccctaaa-gtaagatggggaatttgaagagtagaataagaaatctatgtgtac 11988  T
Q  304 ataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaat 403  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||    
T  11987 ataataaaataaaataaaattcatgtatttattacatagtatgatgtttgaaatcactcacataaaagacaaccacaaatcagataaagacatgcaaaat 11888  T
Q  404 gatcaagatnnnnnnntatatg-aaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagat 502  Q
     ||  ||||        || || |||||||||  ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11887 tatatagataaaaca--atgtgaaaaaaagttaagattaccttttatgcccaattaatgaaacgaggttgaagtttcatgaaaactccatcaaaagagat 11790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 561 - 711
Target Start/End: Complemental strand, 11708 - 11558
Alignment:
Q  561 atggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagag 660  Q
    ||||||||||||||  |||||||| |||||||| ||||||| || |||||||||||| | |||   ||||| || |||| ||||||| | | ||||||||    
T  11708 atggttcttttttccaatcgatgttgatctcagcgatggtggtatgagagaggttggtagcgggagttgagagataaaactttgttttgagattcaagag 11609  T
Q  661 aatgagaaatgaggatgggaggattattttgtttgattgatgtccatctca 711  Q
    |||| ||| |||||||||||||||| |||||||||||  ||||| ||||||    
T  11608 aatgggaagtgaggatgggaggattcttttgtttgatcaatgtcgatctca 11558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 565 - 683
Target Start/End: Complemental strand, 11585 - 11467
Alignment:
Q  565 ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg 664  Q
    ||||||| | ||||| ||||||||||||| | | ||| ||| ||||||||||||| || ||   ||||||||||| | ||| | || ||||| ||||||     
T  11585 ttcttttgtttgatcaatgtcgatctcagcggtagtggtagaagagaggttggcagcgacggccgagggagaaaactgtgtgtgggatttcatgagaata 11486  T
Q  665 agaaatgaggatgggagga 683  Q
    |||||||||||||||||||    
T  11485 agaaatgaggatgggagga 11467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 353 - 507
Target Start/End: Original strand, 42778749 - 42778900
Alignment:
Q  353 gaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcc 452  Q
    ||||||||||| ||||||| ||||||||||| | |||||| | |||||||||||| ||||        || ||||||||||||||||||||||||||||     
T  42778749 gaaaccactcatataaaaggcaaccacaaatcaaagaaaggcgtgcaaaatgatctagataaagaa--atgtgaaaaaagtttggattaccttttttgct 42778846  T
Q  453 caaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca 507  Q
    ||| | |||||||||||||||| || |||||||||||| ||||||||||||||||    
T  42778847 caattgatgaaacgaggttgaa-ttgcatgaaaactccgtcaaaagagataacca 42778900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 2371144 - 2371052
Alignment:
Q  41 aaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaaaatatgtacttgtatttgtta 132  Q
    |||||||| |||||||||| ||||| ||||||||||||||||||||||||| || ||||| ||| ||||| |||||| ||||| | |||||||    
T  2371144 aaggtattccatgtactcgtgaaaaaggagaatcaaggtatattgtgatttatttttttagtcgattattcaaatatatacttatgtttgtta 2371052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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