View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_103 (Length: 242)
Name: NF10271_low_103
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_103 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 39953819 - 39953593
Alignment:
| Q |
1 |
tcacctgtgatgagtgagtgcaaactttcttctcaattcatatgcttcttccggtataattccatccacagttctttttt-atatctaaaaattcaaatc |
99 |
Q |
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| T |
39953819 |
tcacctgtgatgagtgagtgcaaactttcttctcaattcatatgcttcttccagtatagttccatccacagttctttttttatatctaaaaattcaaatc |
39953720 |
T |
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| Q |
100 |
caatggataattaagtagttaatttcaataaggaaaaatcagttcgacgtattacaaagtttaattactaaaaagggcaagctctccaataaattggaat |
199 |
Q |
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| T |
39953719 |
caatggataattaagtagttaatttcaataaggaaaaatcagttctacgtattacgaagtttaattactaaaaaggggaagctctccaataaattggaat |
39953620 |
T |
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| Q |
200 |
aatgaacacgtgttagacactaattag |
226 |
Q |
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| T |
39953619 |
aatgaacacgtgttagacactaattag |
39953593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 88 - 226
Target Start/End: Complemental strand, 33039939 - 33039800
Alignment:
| Q |
88 |
aaaattcaaatccaatggataattaagtagttaatttcaataaggaaaaatcagttcgacgtattacaaagtttaattac-taaaaagggcaagctctcc |
186 |
Q |
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| T |
33039939 |
aaaattcaaaatcaatggataattaagtggttaatttcaatatggaaaaatcagttctgcgtattacaaagtttaattacttaaaaaggggaagctctcc |
33039840 |
T |
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| Q |
187 |
aataaattggaataatgaacacgtgttagacactaattag |
226 |
Q |
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| T |
33039839 |
aataaattggaatcatgaacacgtgttagacactaattag |
33039800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 21989418 - 21989487
Alignment:
| Q |
1 |
tcacctgtgatgagtgagtgcaaactttcttctcaattcatatgcttcttccggtataattccatccaca |
70 |
Q |
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| T |
21989418 |
tcacctgtgatgagtgagtgcaaactttcgtctcaatttatatgcttcttcaagtatagttccatccaca |
21989487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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