View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10271_low_106 (Length: 240)

Name: NF10271_low_106
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10271_low_106
NF10271_low_106
[»] chr5 (20 HSPs)
chr5 (141-240)||(31475993-31476092)
chr5 (141-240)||(40843375-40843474)
chr5 (162-240)||(31279537-31279615)
chr5 (144-240)||(31395702-31395798)
chr5 (129-240)||(31494175-31494286)
chr5 (162-240)||(31284678-31284756)
chr5 (169-240)||(31332167-31332238)
chr5 (125-240)||(31407465-31407580)
chr5 (169-240)||(31368540-31368611)
chr5 (169-240)||(31380952-31381023)
chr5 (125-240)||(31416598-31416713)
chr5 (165-240)||(31643932-31644007)
chr5 (162-240)||(31288447-31288525)
chr5 (169-240)||(31317326-31317397)
chr5 (162-240)||(31378667-31378745)
chr5 (162-240)||(31329885-31329963)
chr5 (162-240)||(31281394-31281472)
chr5 (162-240)||(31362960-31363038)
chr5 (179-240)||(31387852-31387913)
chr5 (162-240)||(31313207-31313285)
[»] chr3 (1 HSPs)
chr3 (143-240)||(25708379-25708476)


Alignment Details
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 31476092 - 31475993
Alignment:
Q  141 tcatccaaattcagaagtggctgatgcagccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgttatgctctaagctcttc 240  Q
    ||||| ||||||||| ||||||||||||| ||||||| ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  31476092 tcatcaaaattcagaggtggctgatgcagacaaaggtatggagatttgtgggctttgcttcagctgctgttggactgctttgttatgctctaagctcttc 31475993  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 40843474 - 40843375
Alignment:
Q  141 tcatccaaattcagaagtggctgatgcagccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgttatgctctaagctcttc 240  Q
    ||||| || |||||| ||||||| ||||| ||||||| |||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||    
T  40843474 tcatcaaagttcagaggtggctgttgcagacaaaggtatggagatttgtgggatttgcttcagctgctgttggactggtttgttatgctctaagctcttc 40843375  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 31279615 - 31279537
Alignment:
Q  162 tgatgcagccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgttatgctctaagctcttc 240  Q
    ||||||||||||| |||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||||    
T  31279615 tgatgcagccaaaagtgtggagatttgtaggctttgcttcagttgttgttggactggtttgttatgctctcagctcttc 31279537  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 31395702 - 31395798
Alignment:
Q  144 tccaaattcagaagtggctgatgcagccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgttatgctctaagctcttc 240  Q
    |||||||||||| ||||||||||||  ||||||| ||||||||||| || | || |||||||||||||||||| |||||||||||||| ||||||||    
T  31395702 tccaaattcagaggtggctgatgcatacaaaggtatggagatttgttggatgtgcttcagctgttgttggacttgtttgttatgctctcagctcttc 31395798  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 129 - 240
Target Start/End: Complemental strand, 31494286 - 31494175
Alignment:
Q  129 tgatacccatcatcatccaaattcagaagtggctgatgcagccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgttatgc 228  Q
    |||||||||| ||||||| ||||| || ||||||| || || |||| ||||||||||||||  |||||| |||||||||| ||||| || ||||||||||    
T  31494286 tgatacccatgatcatccgaattcggatgtggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgc 31494187  T
Q  229 tctaagctcttc 240  Q
    ||||||||||||    
T  31494186 tctaagctcttc 31494175  T

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Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 31284678 - 31284756
Alignment:
Q  162 tgatgcagccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgttatgctctaagctcttc 240  Q
    ||||||||||||| |||||||||||||||||||||| |||| ||| | |||||||| ||||||||||||||||||||||    
T  31284678 tgatgcagccaaaagtgtggagatttgtgggctttgcttcatctgctattggactgctttgttatgctctaagctcttc 31284756  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 31332167 - 31332238
Alignment:
Q  169 gccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgttatgctctaagctcttc 240  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||||||| ||||||||||| ||||||||||    
T  31332167 gccaaaggtgtggagatttgttggctttgcttcatctgttgttggactgctttgttatgctttaagctcttc 31332238  T

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Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 31407580 - 31407465
Alignment:
Q  125 aaaatgatacccatcatcatccaaattcagaagtggctgatgcagccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgtt 224  Q
    |||||||||||| | ||||||| ||||| || ||| ||| ||||| |||| |||||||||||||||||||||| |||||||| ||||||| || | ||||    
T  31407580 aaaatgatacccgtgatcatccgaattcggatgtgcctgttgcagacaaaagtgtggagatttgtgggctttgcttcagctgctgttggattgctctgtt 31407481  T
Q  225 atgctctaagctcttc 240  Q
    ||||||| ||| ||||    
T  31407480 atgctctcagcacttc 31407465  T

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Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 31368540 - 31368611
Alignment:
Q  169 gccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgttatgctctaagctcttc 240  Q
    ||||||||||||||||||||||||||||| |||| || |||||||||| ||||| |||||| ||||||||||    
T  31368540 gccaaaggtgtggagatttgtgggctttgcttcatctcttgttggacttgtttgctatgctttaagctcttc 31368611  T

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Target: chr5; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 31380952 - 31381023
Alignment:
Q  169 gccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgttatgctctaagctcttc 240  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||||||| ||||||||||| | ||||||||    
T  31380952 gccaaaggtgtggagatttgttggctttgcttcatctgttgttggactgctttgttatgctttgagctcttc 31381023  T

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Target: chr5; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 31416713 - 31416598
Alignment:
Q  125 aaaatgatacccatcatcatccaaattcagaagtggctgatgcagccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgtt 224  Q
    |||||||||||  | ||||||||||||| |   |||||| || |  |||| |||||||||||||| ||||||| ||| |||| |||||||||| ||||||    
T  31416713 aaaatgataccgctgatcatccaaattcggtgttggctgttggaaacaaaagtgtggagatttgtaggctttgtttccgctgctgttggactgatttgtt 31416614  T
Q  225 atgctctaagctcttc 240  Q
    ||||||||||||||||    
T  31416613 atgctctaagctcttc 31416598  T

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Target: chr5; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 31644007 - 31643932
Alignment:
Q  165 tgcagccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgttatgctctaagctcttc 240  Q
    ||||||||||||| ||||||||||||||||||| |||| || ||||||||||  ||||||||||||| ||||||||    
T  31644007 tgcagccaaaggtatggagatttgtgggctttgcttcatctattgttggactactttgttatgctcttagctcttc 31643932  T

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Target: chr5; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 31288447 - 31288525
Alignment:
Q  162 tgatgcagccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgttatgctctaagctcttc 240  Q
    ||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||| | | ||||| |||| |||||||    
T  31288447 tgatgcagccaaaagtgtggagatttgtaggctttgcttcagctgttgttggactgctctattatggtctatgctcttc 31288525  T

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Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 31317326 - 31317397
Alignment:
Q  169 gccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgttatgctctaagctcttc 240  Q
    ||||||||||||||||||||||||||||| |||| || |||||||||| ||||| |||||  ||||||||||    
T  31317326 gccaaaggtgtggagatttgtgggctttgcttcatctcttgttggacttgtttgctatgcattaagctcttc 31317397  T

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Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 31378667 - 31378745
Alignment:
Q  162 tgatgcagccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgttatgctctaagctcttc 240  Q
    |||||||||||||||||||||||||| |||| |||| | ||||||||||||||||| ||||  ||||||| || |||||    
T  31378667 tgatgcagccaaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttc 31378745  T

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Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 31329885 - 31329963
Alignment:
Q  162 tgatgcagccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgttatgctctaagctcttc 240  Q
    |||||||||||||||||||||||||| |||| |||  | ||||||||||||||||| ||||  ||||||| || |||||    
T  31329885 tgatgcagccaaaggtgtggagatttctgggattttctgcagctgttgttggactgctttgcaatgctctcagttcttc 31329963  T

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Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 31281394 - 31281472
Alignment:
Q  162 tgatgcagccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgttatgctctaagctcttc 240  Q
    ||||||| || || ||||| || ||||| ||||||| |||||||||| |||||||  ||||||||||| ||||||||||    
T  31281394 tgatgcacccgaaagtgtgcaggtttgtaggctttgcttcagctgttcttggacttctttgttatgctttaagctcttc 31281472  T

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Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 31362960 - 31363038
Alignment:
Q  162 tgatgcagccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgttatgctctaagctcttc 240  Q
    ||||||||||||||||||||||||||||||| |||| | | | ||||| ||||||| | ||  |||||||||| |||||    
T  31362960 tgatgcagccaaaggtgtggagatttgtgggatttgctgctgttgttgctggactgctctgcaatgctctaagttcttc 31363038  T

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Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 31387913 - 31387852
Alignment:
Q  179 tggagatttgtgggctttggttcagctgttgttggactggtttgttatgctctaagctcttc 240  Q
    ||||||||||||   |||| |||| |||||||||||||| ||||||||||||| ||||||||    
T  31387913 tggagatttgtgtcttttgtttcatctgttgttggactgctttgttatgctcttagctcttc 31387852  T

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Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 31313207 - 31313285
Alignment:
Q  162 tgatgcagccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgttatgctctaagctcttc 240  Q
    |||||| |||||||||||||||||||||||| |||| | | | ||||| ||||||| | ||  |||||||||| |||||    
T  31313207 tgatgctgccaaaggtgtggagatttgtgggatttgctgctgttgttgctggactgctctgcaatgctctaagttcttc 31313285  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 25708379 - 25708476
Alignment:
Q  143 atccaaattcagaagtggctgatgcagccaaaggtgtggagatttgtgggctttggttcagctgttgttggactggtttgttatgctctaagctcttc 240  Q
    |||||||||| ||  ||||||||||||  ||| || ||||||||||| || |||| ||||||| |||||||||| || ||||||||||| ||||||||    
T  25708379 atccaaattctgagatggctgatgcaggaaaaagtatggagatttgttggttttgcttcagctattgttggactagtctgttatgctctcagctcttc 25708476  T

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