View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_107 (Length: 240)
Name: NF10271_low_107
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_107 |
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Alignment Details
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 31628674 - 31628768
Alignment:
| Q |
19 |
gaaacgcaaagtagcaaacagtacaacactgcccacagagaaaataatttattatcaacaaacatttaaaagctctcattctcattctaactctc |
113 |
Q |
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| T |
31628674 |
gaaacgcaaagtagcaaacagtacaacactgcccacagagaaaataatttattatcaacaaacatttaaaagttctcattctcattctaactctc |
31628768 |
T |
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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 31628835 - 31628881
Alignment:
| Q |
178 |
aaactattatggtgaaattcagacactctcgtcttggaccacgaaaa |
224 |
Q |
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| T |
31628835 |
aaactattatggtgaaattcagacactctcgtcttggaccacgaaaa |
31628881 |
T |
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