View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10271_low_109 (Length: 239)
Name: NF10271_low_109
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_109 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40942663 - 40942449
Alignment:
| Q |
1 |
cgtggcactctttgatcgtggtattcttgtaccttggttggtagttggtgagaaatatagtggaagcaaccatgcatgaccatatgactggtctagattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40942663 |
cgtggcactctttgatcgtggtattcttgtaccttggttggtagttggtgagaaatatagtggaagcaaccatgcat------atgactggtctagattc |
40942570 |
T |
|
| Q |
101 |
aacgcaaaatgtcagtcaacccaatacatttatatattaatatacttatcgatcaacatttacttaaagagtgtgatcaatgctatagggttgtaaatga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40942569 |
aacgcaaaatgtcagtcaacccaatacatttatat--taatatacttatcgatcaacatttacttaaagagtgtgatcaatgctatatggttgtaaatga |
40942472 |
T |
|
| Q |
201 |
cttcatctttttaacgatatatt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
40942471 |
cttcatctttttaacgatatatt |
40942449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University