View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_11 (Length: 482)
Name: NF10271_low_11
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 34612635 - 34613103
Alignment:
| Q |
1 |
gaagtttggatatgaatcattcttttctctctactttgatggta-taagagctcttctatgaacagaattagaactctttttaagagttctgctgcacat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34612635 |
gaagtttggatatgaatcattcttttctctctactttgatggtaataagagctcttctatgaacagaattagaactctttttaatagttctgctgcacat |
34612734 |
T |
|
| Q |
100 |
cacaaatggttcgagctaatggctccggtggctgcagtgatgcttccgccgcgttggcagcaactcagatttctgagattcaagccaatcctttctatat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34612735 |
cacaaatggttcgagctaatggctccggtggctgcagtgatgcttccgccgtgttgacagcaactcagatttctgagattcaggccaatcctttctatat |
34612834 |
T |
|
| Q |
200 |
tcgtccgagtgagagtcccacttcagtgataattttgcaacttcacaccggttccaattataatgtttggacccgttctatgaaacgggctttg---ttc |
296 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34612835 |
tcgtccaagtgagagtcccacttcagtgataattttgcaacttcacaccggttccaattataatgtttggacccgttctatgaaacgggctttgttcttc |
34612934 |
T |
|
| Q |
297 |
ctcatgaacaaataccaatttgttgatggtagatcgttgttttaacttctcgagatctcaactacgaggcgtgggaatgcttcaacaatatgattcaatc |
396 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34612935 |
ctcatgaacaaataccaatttgttgatggtagatcgctgttttaacttctcgagatctcaactacgaggtgtgggaatgcttcaacaatatgattcaatc |
34613034 |
T |
|
| Q |
397 |
atggctcatttcttcggcttctctacatttcgctcaaaacgcggtatttcttgataatgttgttgatgt |
465 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34613035 |
atggctcatttcttcggcttctccacatttcgctcaaaacgcggtatttcttgataatgttgttgatgt |
34613103 |
T |
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