View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_111 (Length: 239)
Name: NF10271_low_111
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_111 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5446181 - 5446400
Alignment:
| Q |
1 |
actattgaagaatatgtttagagtcaacgatgaagtcaaagagccttgcaaaagcattaatcctgatgaagctgtggcttatggcgccgctgttcaagca |
100 |
Q |
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| T |
5446181 |
actattgaagaatatgtttagagtcaacgatgaagtcaaagagccttgcaaaagcattaatcctgatgaagctgtggcttatggcgccgctgttcaagca |
5446280 |
T |
|
| Q |
101 |
gcaataatattgaatactgaaggagacaagaaaatcgaagacttgttactgttggatgttatgccttttagtcttggtgttgaaactaaaggcggtgtca |
200 |
Q |
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| T |
5446281 |
gcaata---ttgaatactgaaggagacaagaaaatcgaagacttgttactgttggatgttatgccttttagtcttggtgttgaaactaaaggtggtgtca |
5446377 |
T |
|
| Q |
201 |
tgtctgttttgattccaaagaat |
223 |
Q |
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| T |
5446378 |
tgtctgttttgattccaaagaat |
5446400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 5433183 - 5432982
Alignment:
| Q |
18 |
ttagagtcaacgatgaagtcaaagagccttgcaaaagcattaatcctgatgaagctgtggcttatggcgccgctgttcaagcagcaataatattgaatac |
117 |
Q |
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| T |
5433183 |
ttagagtcaatggagaaatcaaagagccatgcaaaagcattaatccttatgaagttgtggtgtatgatgcctcggttcaagcagcgata---ttgagtgt |
5433087 |
T |
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| Q |
118 |
tgaaggagacaagaaaatcgaagacttgttactgttggatgttatgccttttagtcttggtgttgaaactaaaggcggtgtcatgtctgttttgattcca |
217 |
Q |
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| T |
5433086 |
tgaaggagacaagaaaattcaagacttgttgttgttagatgttatacctcacagtcttggtgttgaaactgatggtggtgtcatgtttgttttgattcga |
5432987 |
T |
|
| Q |
218 |
aagaa |
222 |
Q |
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||||| |
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| T |
5432986 |
aagaa |
5432982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 7541936 - 7541887
Alignment:
| Q |
47 |
tgcaaaagcattaatcctgatgaagctgtggcttatggcgccgctgttca |
96 |
Q |
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| T |
7541936 |
tgcaagagcattaatcctgatgaggctgttgcttatggggcagctgttca |
7541887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 14703118 - 14703069
Alignment:
| Q |
47 |
tgcaaaagcattaatcctgatgaagctgtggcttatggcgccgctgttca |
96 |
Q |
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| T |
14703118 |
tgcaacagcattaaccctgatgaagctgtagcttatggggcagctgttca |
14703069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 11999118 - 11999066
Alignment:
| Q |
47 |
tgcaaaagcattaatcctgatgaagctgtggcttatggcgccgctgttcaagc |
99 |
Q |
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| T |
11999118 |
tgcaagagcattaaccctgatgaggctgtagcttatggggcagctgttcaagc |
11999066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 54396142 - 54396078
Alignment:
| Q |
38 |
aaagagccttgcaaaagcattaatcctgatgaagctgtggcttatggcgccgctgttcaagcagc |
102 |
Q |
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| T |
54396142 |
aaagagctttgcaagagtattaaccctgatgaagctgttgcttatggtgctgctgttcaagcagc |
54396078 |
T |
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