View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10271_low_115 (Length: 238)
Name: NF10271_low_115
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_115 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 34434907 - 34434685
Alignment:
| Q |
1 |
aaaatttggacccgacaaatcgactgttggctcaactctcttattttttacagatttctttggtgcacttagggcaagagtatacgatgatgaagtgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34434907 |
aaaatttggacccgacaaatcgactgttggctcaactctcttattttttacagatttctttggtgcacttagggcaagagtatatgatgatgaagtgaga |
34434808 |
T |
|
| Q |
101 |
aagtggattgctggtgttggcattgaaaccattgggaaaaagcttgtgaactcaaaagaaggacctccaacttttgatcaacccaagatgagtttggaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34434807 |
aagtggattgctggtgttggcattgaaaccattgggaaaaagcttgtgaactcaaaagaaggacctccaacttttgatcaacccaagatgagtttggaga |
34434708 |
T |
|
| Q |
201 |
aactgttggagtatggtaacatg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
34434707 |
aactgttggagtatggtaacatg |
34434685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 51 - 223
Target Start/End: Complemental strand, 30665574 - 30665402
Alignment:
| Q |
51 |
cagatttctttggtgcacttagggcaagagtatacgatgatgaagtgagaaagtggattgctggtgttggcattgaaaccattgggaaaaagcttgtgaa |
150 |
Q |
| |
|
|||||||||| |||||| | ||||| ||||| ||||||||||||||||| |||||| || |||| ||||| |||||||| ||||| || ||||||||||| |
|
|
| T |
30665574 |
cagatttcttcggtgcattgagggctagagtgtacgatgatgaagtgaggaagtgggtttctggagttggtattgaaacaattggaaagaagcttgtgaa |
30665475 |
T |
|
| Q |
151 |
ctcaaaagaaggacctccaacttttgatcaacccaagatgagtttggagaaactgttggagtatggtaacatg |
223 |
Q |
| |
|
|||||| || ||||| ||| ||||| || || ||||||| | || || || |||||||||||||||||| |
|
|
| T |
30665474 |
ctcaaaggacggaccaccagtgtttgagcagccaaagatgacactagaaaagctattggagtatggtaacatg |
30665402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 6852961 - 6852901
Alignment:
| Q |
131 |
attgggaaaaagcttgtgaactcaaaagaaggacctccaacttttgatcaacccaagatga |
191 |
Q |
| |
|
|||||||||| ||||||||| |||||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
6852961 |
attgggaaaaggcttgtgaattcaaaagagggacctccaacttttgagcaaccaaagatga |
6852901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University