View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_120 (Length: 229)
Name: NF10271_low_120
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_120 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0137 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 3895718 - 3895940
Alignment:
| Q |
7 |
gtaagagcttcttggaaggatgtaaggtctgcgaaaacaaacgatcctttttaaaatgtgattcaatgtcttcagagcatagttgtcaaatcgaaattta |
106 |
Q |
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| T |
3895718 |
gtaagagcttcttggaaggatgtaaggtctgcgaaaacaaacgatcctttttaaaatatgattcaatgtcttcagagcatagttgtcaaatcgaaattta |
3895817 |
T |
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| Q |
107 |
aacggtaaatctgaagatctatttttctaatggtaaatcaaatcttactagatatatttgcaacaaaaatattaacatttttaagtacaagaaagcaaca |
206 |
Q |
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| T |
3895818 |
aattgtgaatctgaagatctatttttctaatggtgaatcaaatcttattagatatatttgcaacaaaaatattaacatttttaagtacaagaaagcaaca |
3895917 |
T |
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| Q |
207 |
tagcttgaaaggttagagttagc |
229 |
Q |
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| T |
3895918 |
tagcttgaaaggttagagttagc |
3895940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 210
Target Start/End: Original strand, 3889264 - 3889434
Alignment:
| Q |
36 |
tgcgaaaacaaacgatcctttttaaaatgtgattcaatgtcttcagagcatagttgtcaaatcgaaatttaaacggtaaatctgaagatctatttttcta |
135 |
Q |
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| T |
3889264 |
tgcgaaaacaaacgatctttttttcaatgtcattcaatatc------gcatagttgtcaaatcgagatttaaattgttaatctgaagatctattttttta |
3889357 |
T |
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| Q |
136 |
atggtaaatcaaatcttactagatatattt--gcaacaaaaatattaacatttttaagtacaagaaagcaacatagc |
210 |
Q |
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| T |
3889358 |
atggtgaatcgaatcttactagatatatatcatcaacaaaaaatataacatttttaagtgcaagaaagcaacatagc |
3889434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 180
Target Start/End: Original strand, 3597 - 3735
Alignment:
| Q |
36 |
tgcgaaaacaaacgatcctttttaaaatgtgattcaatgtcttcagagcatagttgtcaaatcgaaatttaaacggtaaatctgaagatctatttttcta |
135 |
Q |
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||||||||||||||||||||||| ||||| ||||||| || |||||||||||||||| | |||||| || |||||||||||||||||||||| |
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| T |
3597 |
tgcgaaaacaaacgatccttttttcaatgtcattcaatatc------gcatagttgtcaaatcaagatttaatttgttaatctgaagatctatttttcta |
3690 |
T |
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| Q |
136 |
atggtaaatcaaatcttactagatatatttgcaacaaaaatatta |
180 |
Q |
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| T |
3691 |
atggtgaatcgaatcttactagatatattatcaacaaaaatatta |
3735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 3737 - 3780
Alignment:
| Q |
167 |
caacaaaaatattaacatttttaagtacaagaaagcaacatagc |
210 |
Q |
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| T |
3737 |
caacaaaaatattaacatttttaagtgcaagaaagcaacatagc |
3780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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