View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_122 (Length: 229)
Name: NF10271_low_122
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_122 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 43 - 229
Target Start/End: Original strand, 42251246 - 42251432
Alignment:
| Q |
43 |
ttaagaatatgcatcaatttttctttatcagtctcatcttttaatttttactttcttgctatattctatcaaattaaacttaagaagagaaaattactcc |
142 |
Q |
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| T |
42251246 |
ttaagaatatgcatcaatttttctttatcagtctcatcttctaatttttactttcttgctatattcgatcaaattaaacttaagaagagaaaattactcc |
42251345 |
T |
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| Q |
143 |
cctgatgattttgttcctaaaatttatacttcttcaaccaccatgaaagtacataagagcatcattcattccccatcttcacaaaaa |
229 |
Q |
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| T |
42251346 |
cctgataattttgttcctaaaatttatacttcttcaaccaccatgaaagtacataagagcatcattcattccccatcttcacaaaaa |
42251432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 5487168 - 5487272
Alignment:
| Q |
40 |
aacttaagaa-tatgcatcaatttttctttatcagtctcatcttttaatttttactttcttgctatattctatcaaattaaactt-aagaagagaaaatt |
137 |
Q |
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| T |
5487168 |
aacttaagaactatgcatcaattttt--ttatcagtttcatcttctattttttactttcttgctatattcaatcaaattaaacttaaaaaagagaaaatt |
5487265 |
T |
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| Q |
138 |
actcccc |
144 |
Q |
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| T |
5487266 |
cctcccc |
5487272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 40 - 207
Target Start/End: Complemental strand, 11677693 - 11677527
Alignment:
| Q |
40 |
aacttaagaa-tatgcatcaatttttctttatcagtctcatcttttaatttttactttcttgctatattctatcaaattaaacttaagaagagaaaatta |
138 |
Q |
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| T |
11677693 |
aacttaagaactatgcatcaattttt--ttatcagtttcatcttctattttttactttcttactatattcaatcaaattaaacttaaaaagagaaaatta |
11677596 |
T |
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| Q |
139 |
ctcccctgatgattttgttcctaaaatttatacttcttcaaccaccatgaaagtacataagagcatcat |
207 |
Q |
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| T |
11677595 |
ctccccctataattttgttcctaaaatttatacttcttcaaccaccatgaaagtaaataggagcatcat |
11677527 |
T |
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