View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_123 (Length: 227)
Name: NF10271_low_123
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_123 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 40942898 - 40942672
Alignment:
| Q |
1 |
gttgtgaatttcctgatttgtgaaggaagtagttaggctttatatagaggtttctaatttggaggctacatacatttacaattattataatattattatg |
100 |
Q |
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| T |
40942898 |
gttgtgaatttcctgatttgtgaaggaagtagttaggctttatatagaggtttctaatttggaggctacatacatttacaattattataatattattatg |
40942799 |
T |
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| Q |
101 |
tgtgttggtgtgctatgtgtgtttggtaggtgatgagggacaagttgcaaaagtaggaggaaaaaagtgggtttgttgaaaattaattatggccgtttga |
200 |
Q |
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| T |
40942798 |
tgtgttggtgtgctatgtgtgtttggtaggtgatgagggacaagttgcaaaagtaggaggaaaaaagtgggtttgttgaaaattaattatggccgtttga |
40942699 |
T |
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| Q |
201 |
ttatctcttactattgaacggttatga |
227 |
Q |
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| T |
40942698 |
ttatctcttactattgaacggttatga |
40942672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 40956061 - 40956019
Alignment:
| Q |
162 |
aaaaagtgggtttgttgaaaattaattatggccgtttgattat |
204 |
Q |
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| T |
40956061 |
aaaaagtgggtttgttgaaaattaattatggccgtttgattat |
40956019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 40969863 - 40969773
Alignment:
| Q |
139 |
gacaagttgcaaaagtaggaggaaaaaagtg--ggtttgttgaaaattaattatggccgtttgattatctcttactattgaacggttatga |
227 |
Q |
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| T |
40969863 |
gacaagttgcataaggcgtagaaaaaaagtgtaggtttgttgaaaattaattatgagcgtttgattatcacttaccattgaccggttatga |
40969773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 40956207 - 40956139
Alignment:
| Q |
1 |
gttgtgaatttcctgatttgtgaaggaagtagttaggctttatatagaggtttctaatttggaggctacat |
71 |
Q |
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| T |
40956207 |
gttgtgaatttcctgagatgagaaggaagtaattgagctttatatagaggtttgt--tttggaggctacat |
40956139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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