View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_129 (Length: 226)
Name: NF10271_low_129
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_129 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 12869971 - 12870182
Alignment:
| Q |
1 |
tggttaacattaatcgaacaaggccggtcaagtttgtttctttatggcggaaagatatttgtgatttagatagataaagtgagggagtcgaacctagatt |
100 |
Q |
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| T |
12869971 |
tggttaacattaatcgaacaaggccggtcaagtttgtttctttatggcggaaagatatttgtgatttaga----taaagtgagggagtcgaacctagatt |
12870066 |
T |
|
| Q |
101 |
ggtttcttgaatatgcaaagaagaaaatagggaatggtgtcgctacannnnnnnngcgtgagccttggctttcaatttaccgctttgcaacgcttttcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12870067 |
ggtttcttgaatatgcaaagaagaaaatagggaatggtgtcgctacattttttttgcgtgagccttggctttcaatttaccgctttgtgacgcttttcc- |
12870165 |
T |
|
| Q |
201 |
tatactttttcctatgc |
217 |
Q |
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|| |||||||||||||| |
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| T |
12870166 |
tagactttttcctatgc |
12870182 |
T |
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