View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_130 (Length: 226)
Name: NF10271_low_130
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_130 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 4296487 - 4296301
Alignment:
| Q |
3 |
tgattattgaggacattttctataacaacactgctaaatagatgcatatacagtgaatgtagaggtttccagaattacacttcttttgggtcaatcagaa |
102 |
Q |
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| T |
4296487 |
tgattattgaggacattttctataacaacactgctaaatagatgcatatacagtgaatgtagaggtttccagaattagacttcttttgggtcaatcagaa |
4296388 |
T |
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| Q |
103 |
ctaca-----cttaattaattatgggtactaataagcatgagccacaacatacacaaacatttagttcatagatatatagagttaaa |
184 |
Q |
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| T |
4296387 |
ctacactcttcttaattaattatgggtactaataagcatgagccacaacatacacaaacatttagttcatagatatatagagttaaa |
4296301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 4301904 - 4301865
Alignment:
| Q |
123 |
gtactaataagcatgagccacaacatacacaaacatttag |
162 |
Q |
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| T |
4301904 |
gtactaataagcatgagccacaacattcacaaatatttag |
4301865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 4303130 - 4303040
Alignment:
| Q |
38 |
aaatagatgcatatacagtgaatgtagaggtttccagaattacacttcttttg-ggtcaatcagaactacacttaattaattatgggtactaata |
131 |
Q |
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| T |
4303130 |
aaatagacgcatatatagtgaatgtaa--gtaaccaaaattacaattcttttgaggtaaatcagaactacactc--ttaattatgggtactaata |
4303040 |
T |
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