View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_133 (Length: 223)
Name: NF10271_low_133
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_133 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 46322729 - 46322904
Alignment:
| Q |
25 |
gagatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacg |
124 |
Q |
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||||||||| ||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46322729 |
gagatggaaggaatagagcacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacg |
46322828 |
T |
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| Q |
125 |
gctttcctgaactctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46322829 |
gctttcctgaactctggtactcttggcgccaccagattgcggctctcggctctctcggctaccgcgccgtagctcc |
46322904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 46326434 - 46326597
Alignment:
| Q |
25 |
gagatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacg |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46326434 |
gagatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacg |
46326533 |
T |
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| Q |
125 |
gctttcctgaactctggtactcttggcgccaccagattgcggctctcggctccctcggctaccg |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
46326534 |
gctttcctgaactctggtactcttggcgccaccagattgcggctctcggatccctcggttaccg |
46326597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 46494834 - 46494671
Alignment:
| Q |
25 |
gagatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacg |
124 |
Q |
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||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| |
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| T |
46494834 |
gagatggaaggaatagagcacagaacagtggaagtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcctgttccttcacg |
46494735 |
T |
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| Q |
125 |
gctttcctgaactctggtactcttggcgccaccagattgcggctctcggctccctcggctaccg |
188 |
Q |
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| T |
46494734 |
gattccctgaactctggtactcttggcgccaccagattgcggctctcggctctctcggttaccg |
46494671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 46524829 - 46524667
Alignment:
| Q |
26 |
agatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacgg |
125 |
Q |
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|||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
46524829 |
agatggaaggaatagaacacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgtcttgttccttcatgg |
46524730 |
T |
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| Q |
126 |
ctttcctgaactctggtactcttggcgccaccagattgcggctctcggctccctcggctaccg |
188 |
Q |
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||| || ||||||||||| || |||||||||||||||| |||||| |||||||||||||||| |
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| T |
46524729 |
cttcccagaactctggtattcatggcgccaccagattgtagctctcagctccctcggctaccg |
46524667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 46479334 - 46479171
Alignment:
| Q |
25 |
gagatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacg |
124 |
Q |
| |
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||||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||| |
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| T |
46479334 |
gagatggaaggaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacg |
46479235 |
T |
|
| Q |
125 |
gctttcctgaactctggtactcttggcgccaccagattgcggctctcggctccctcggctaccg |
188 |
Q |
| |
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|||| |||||||||||||| || ||||||||||||||||| ||||| ||||||||||| ||||| |
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| T |
46479234 |
gcttccctgaactctggtattcatggcgccaccagattgctgctcttggctccctcggttaccg |
46479171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 46532383 - 46532208
Alignment:
| Q |
25 |
gagatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacg |
124 |
Q |
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||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| | |
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| T |
46532383 |
gagatggaaggaatagaacacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatg |
46532284 |
T |
|
| Q |
125 |
gctttcctgaactctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctcc |
200 |
Q |
| |
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|||| || ||||||||||| || ||||||||||| |||| ||||| ||||||||||| ||||||||||| ||||| |
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| T |
46532283 |
gcttcccagaactctggtattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctcc |
46532208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 27 - 188
Target Start/End: Complemental strand, 46520762 - 46520601
Alignment:
| Q |
27 |
gatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggc |
126 |
Q |
| |
|
||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||| |
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| T |
46520762 |
gatggaaggaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggc |
46520663 |
T |
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| Q |
127 |
tttcctgaactctggtactcttggcgccaccagattgcggctctcggctccctcggctaccg |
188 |
Q |
| |
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|| |||||||||||||| || ||||||||||||||||| ||||| ||||||||||| ||||| |
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| T |
46520662 |
ttccctgaactctggtattcatggcgccaccagattgctgctcttggctccctcggttaccg |
46520601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 36 - 200
Target Start/End: Complemental strand, 46490525 - 46490361
Alignment:
| Q |
36 |
aatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaa |
135 |
Q |
| |
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||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |||||| |
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| T |
46490525 |
aatagaacacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaa |
46490426 |
T |
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| Q |
136 |
ctctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctcc |
200 |
Q |
| |
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|||||||| || ||||||||||||||| | ||||| ||||||||||| |||||||| || ||||| |
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| T |
46490425 |
ctctggtattcatggcgccaccagatttctgctcttggctccctcggttaccgcgctgttgctcc |
46490361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 46517122 - 46516948
Alignment:
| Q |
26 |
agatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacgg |
125 |
Q |
| |
|
|||||||| || |||| || ||||||||||||||||||||||||||||||||| | || |||||||| ||||||||||| | || ||||||||||| || |
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| T |
46517122 |
agatggaaggagtagagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatgg |
46517023 |
T |
|
| Q |
126 |
ctttcctgaactctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctcc |
200 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| |||||| ||||||| ||||||||| |||| ||||| |
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| T |
46517022 |
ttttcctgaaatctggtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctcc |
46516948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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