View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10271_low_134 (Length: 220)

Name: NF10271_low_134
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10271_low_134
NF10271_low_134
[»] chr4 (11 HSPs)
chr4 (14-220)||(31150941-31151147)
chr4 (32-220)||(31529116-31529304)
chr4 (20-220)||(31488909-31489109)
chr4 (14-220)||(31159839-31160045)
chr4 (20-220)||(31030324-31030524)
chr4 (45-220)||(31501434-31501609)
chr4 (20-220)||(31020443-31020643)
chr4 (111-220)||(31476324-31476433)
chr4 (134-220)||(31496264-31496350)
chr4 (112-220)||(31482160-31482268)
chr4 (20-220)||(31162222-31162423)
[»] chr6 (8 HSPs)
chr6 (36-217)||(12781337-12781518)
chr6 (111-220)||(12785602-12785711)
chr6 (114-214)||(12782166-12782266)
chr6 (134-220)||(33307172-33307258)
chr6 (116-220)||(33390741-33390845)
chr6 (134-220)||(33288261-33288347)
chr6 (33-82)||(33060140-33060189)
chr6 (33-82)||(33361083-33361132)
[»] chr2 (1 HSPs)
chr2 (32-220)||(17437997-17438185)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 31150941 - 31151147
Alignment:
Q  14 ataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactcc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150941 ataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactcc 31151040  T
Q  114 aattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatgg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151041 aattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatgg 31151140  T
Q  214 attcacc 220  Q
    |||||||    
T  31151141 attcacc 31151147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 32 - 220
Target Start/End: Original strand, 31529116 - 31529304
Alignment:
Q  32 tcgcacctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaa 131  Q
    ||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||||| | ||  ||||| ||| | | |||||| ||||| ||||||    
T  31529116 tcgcacctcggaaggatcaacatcatagaaaacagggagaacacgttttccagaaagttgtacgcaatgaaggatgtattgcaattcccgcaagcaccaa 31529215  T
Q  132 actgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacc 220  Q
      ||||||||||||||| || ||||| || ||||  ||| || ||||| |||| || || |||||||||||||||||||| ||||||||    
T  31529216 gttgaggaagcatagttgtttgagaagacaacaatgaaagtccgagaggcttcgatagcacgaaggagttcaggtgctatagattcacc 31529304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 31489109 - 31488909
Alignment:
Q  20 tcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattct 119  Q
    ||||||||||| || |||||| || |||||||||||||| || ||||| ||||||||| ||||| | | ||||  |   ||||| ||| | |||||||||    
T  31489109 tcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaacacgtcttccaaaaacttgactgtagtgaaggatgtattccaattct 31489010  T
Q  120 cgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcac 219  Q
    ||||| ||||||  ||||||||||||||| || ||||  ||| |||  |||| ||||||  |||||||||| |||| ||| || |||||||| |||||||    
T  31489009 cgcaagcaccaagttgaggaagcatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacgaatgagctcgggtgctatcgattcac 31488910  T
Q  220 c 220  Q
    |    
T  31488909 c 31488909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 31159839 - 31160045
Alignment:
Q  14 ataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactcc 113  Q
    ||||| ||| ||||||| || |||||| || ||||||||||||||||| | ||| ||||||||  ||||||| | ||||  ||  ||||| ||| | |||    
T  31159839 ataacttccattttgatgtctcacctcagaaggatcaacatcatagaaaatagggagaacacgagttccagaaacttgactgcagtgaaggatgtattcc 31159938  T
Q  114 aattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatgg 213  Q
    || |||||||| |||||   ||||||||||||||| || ||||| |  |||| ||||| ||  ||| ||||||||||  ||||||| || ||||||||||    
T  31159939 aactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaataaaaacctttgaggcttcaattgcatgaaggagctcgggtgctatgg 31160038  T
Q  214 attcacc 220  Q
    |||||||    
T  31160039 attcacc 31160045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 31030324 - 31030524
Alignment:
Q  20 tcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattct 119  Q
    ||||||||||| || |||||| || |||||||||||||| || ||||| ||||||||| ||||||| | ||||  ||  | ||| |||    ||||||||    
T  31030324 tcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaacacgtcttccagaaacttgactgcagtcaaggatgtgtaccaattct 31030423  T
Q  120 cgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcac 219  Q
    ||||| ||||||  ||||||||||||||| || ||||  ||| |||  |||| ||||||  |||||||||| |||| ||| || |||| |||||||||||    
T  31030424 cgcaagcaccaagttgaggaagcatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacgaatgagctcgggtggtatggattcac 31030523  T
Q  220 c 220  Q
    |    
T  31030524 c 31030524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 220
Target Start/End: Complemental strand, 31501609 - 31501434
Alignment:
Q  45 ggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaaactgaggaagcat 144  Q
    ||||||||||||||||| |||||||||||| |||||  |||||  || | || || ||| ||    || |||||| |||| ||||||| |||||||||||    
T  31501609 ggatcaacatcatagaaaacaggcagaacatgttttttagatacgtggacgcattcaaggatcttttctaattcttgcaagcaccaaattgaggaagcat 31501510  T
Q  145 agttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacc 220  Q
    ||||| | ||||  ||| |||||||||| | ||| ||||||||||| ||||| || || | |||||||||||||||    
T  31501509 agttccttgagaggaccgcaacaaaaatataagaatcttcaattgcacgaagaagctcggatgctatggattcacc 31501434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 31020443 - 31020643
Alignment:
Q  20 tcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattct 119  Q
    ||||||||||| || |||||| || |||||||||||||| || ||||| ||||||||| ||||||| | ||||  ||  | ||| |||    ||||||||    
T  31020443 tcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaacacgtcttccagaaacttgactgcagtcaaggatgtgtaccaattct 31020542  T
Q  120 cgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcac 219  Q
    ||||| ||||||  |||||||| |||||| || ||||  ||| |||  |||| ||||||  |||||||||| |||| ||| || |||| |||||||||||    
T  31020543 cgcaagcaccaagttgaggaagaatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacgaatgagctcgggtggtatggattcac 31020642  T
Q  220 c 220  Q
    |    
T  31020643 c 31020643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 31476433 - 31476324
Alignment:
Q  111 tccaattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgcta 210  Q
    |||||||||  ||| ||||||  |||| |||| |||||||| || || |||||||| |||| ||||||  ||||||||||  ||| ||||||||||||||    
T  31476433 tccaattctttcaagcaccaagttgagaaagcgtagttctttgacaagaccacaacgaaaacctgagacccttcaattgcatgaaagagttcaggtgcta 31476334  T
Q  211 tggattcacc 220  Q
    ||||||||||    
T  31476333 tggattcacc 31476324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 31496350 - 31496264
Alignment:
Q  134 tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacc 220  Q
    |||| ||||||||||| | || || ||||||||||||| |||||||| ||||||||| | |||||| | |||| |||||||||||||    
T  31496350 tgagaaagcatagttccttgataagaccacaacaaaaacctgagagttttcaattgcacaaaggagcttaggtcctatggattcacc 31496264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 31482268 - 31482160
Alignment:
Q  112 ccaattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctat 211  Q
    ||||||| ||||| ||||||  ||||||||||||  ||||||| || ||||| |  |||||||||||| |||||||||| |||| |||| | ||| ||||    
T  31482268 ccaattcacgcaagcaccaagttgaggaagcataactcttagacaagaccacgatgaaaatctgagagacttcaattgcacgaaagagtgcgggttctat 31482169  T
Q  212 ggattcacc 220  Q
    |||| ||||    
T  31482168 ggatgcacc 31482160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 31162222 - 31162423
Alignment:
Q  20 tcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattct 119  Q
    |||||||||||||| || |||  | ||||||||||||||||| |||||||||||| |  || | || | || || ||  ||||| ||| | || ||||||    
T  31162222 tcctttttgatatctcatctcataaggatcaacatcatagaaaacaggcagaacatgcctttcggagactttaatgcagtgaaggatggattctaattct 31162321  T
Q  120 cgcaaacacca--aactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattc 217  Q
     |||| |||||  |  ||||||||||||||||||||| || |||||||  |||||| ||||||| || ||||||| |||||| || | | | ||||||||    
T  31162322 tgcaagcaccaatagttgaggaagcatagttcttagaaaataccacaatgaaaatcagagagtc-tcgattgctccaaggagctctgatccaatggattc 31162420  T
Q  218 acc 220  Q
    |||    
T  31162421 acc 31162423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 12781337 - 12781518
Alignment:
Q  36 acctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaaactg 135  Q
    ||||| || ||||||||||||||||| ||||| |||||  ||||||||  |  || |  ||  ||||| ||| | |||||||||||||||||||||  ||    
T  12781337 acctcagaaggatcaacatcatagaaaacaggaagaacgtgttttccatgttttttactgcaatgaaggatgtattccaattctcgcaaacaccaagttg 12781436  T
Q  136 aggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattc 217  Q
    |||||||||||||||||||||| || ||||   ||| ||||||| |||||||||||| || |||| | ||||||||| ||||    
T  12781437 aggaagcatagttcttagagaatacaacaatgtaaacctgagaggcttcaattgctctaaagagtccgggtgctatgaattc 12781518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 12785602 - 12785711
Alignment:
Q  111 tccaattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgcta 210  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||| || ||||   ||| ||||||| |||||||||||| || |||| | |||||||    
T  12785602 tccaattctcgcaaacaccaagttgaagaagcatagttcttagagaatacaacaatgtaaagctgagaggcttcaattgctctaaagagtccgggtgcta 12785701  T
Q  211 tggattcacc 220  Q
    || |||||||    
T  12785702 tgaattcacc 12785711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 214
Target Start/End: Original strand, 12782166 - 12782266
Alignment:
Q  114 aattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatgg 213  Q
    ||||||||||||||||||  ||| ||||||||||| |||||||| || ||||  |||| ||||||| ||||||||||| ||| ||| || | ||||||||    
T  12782166 aattctcgcaaacaccaagttgaagaagcatagtttttagagaatacaacaatgaaaacctgagagccttcaattgcttgaatgaggtcggatgctatgg 12782265  T
Q  214 a 214  Q
    |    
T  12782266 a 12782266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 33307172 - 33307258
Alignment:
Q  134 tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacc 220  Q
    |||||||||||||||| | ||||| ||  ||||||||| | ||||  |||| |||||||||||||| |||||| |||| ||||||||    
T  33307172 tgaggaagcatagttccttgagaagactgcaacaaaaacccgagatccttcgattgctcgaaggagctcaggttctatagattcacc 33307258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 33390741 - 33390845
Alignment:
Q  116 ttctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggat 215  Q
    |||| ||||||||||   |||| ||||||||||  | ||||||||| ||||| ||| ||||||  |||| |||| | |||| ||||||||| ||||||||    
T  33390741 ttcttgcaaacaccatgttgagaaagcatagtttcttgagaaaaccgcaacataaacctgagatccttcgattgattgaagaagttcaggtcctatggat 33390840  T
Q  216 tcacc 220  Q
    |||||    
T  33390841 tcacc 33390845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 33288261 - 33288347
Alignment:
Q  134 tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacc 220  Q
    |||||||||||||||  | ||||| ||  |||| |||| ||| ||  |||| |||||||||||||| |||||| |||||||||||||    
T  33288261 tgaggaagcatagtttcttgagaatactgcaacgaaaacctgggatccttcgattgctcgaaggagctcaggtcctatggattcacc 33288347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 33060140 - 33060189
Alignment:
Q  33 cgcacctctgatggatcaacatcatagaacacaggcagaacacgttttcc 82  Q
    |||||||| || ||||||||||||||||| ||||| |||||| |||||||    
T  33060140 cgcacctcagaaggatcaacatcatagaaaacaggaagaacatgttttcc 33060189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 33361083 - 33361132
Alignment:
Q  33 cgcacctctgatggatcaacatcatagaacacaggcagaacacgttttcc 82  Q
    |||||||| || ||||||||||||||||| ||||| |||||| |||||||    
T  33361083 cgcacctcagaaggatcaacatcatagaaaacaggaagaacatgttttcc 33361132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 220
Target Start/End: Complemental strand, 17438185 - 17437997
Alignment:
Q  32 tcgcacctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaa 131  Q
    ||||||||| || ||||||||||||||||| ||||| |||||| ||||||| |  |  |||| || || |  |||    || ||||||  |||||||||     
T  17438185 tcgcacctcagaaggatcaacatcatagaaaacaggaagaacatgttttcctggcacctgaacgcattcacatatcttttctaattcttccaaacaccat 17438086  T
Q  132 actgaggaagcatagt-tcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacc 220  Q
      |||||||||||||| |||| ||||||||| ||||||||| ||||||  |||| ||||||||||| || |||| | |||||||||||||    
T  17438085 gttgaggaagcatagtatctt-gagaaaaccgcaacaaaaacctgagatccttctattgctcgaagaagctcagatcctatggattcacc 17437997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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