View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_136 (Length: 219)
Name: NF10271_low_136
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_136 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 30818188 - 30818375
Alignment:
| Q |
14 |
gcaaaggatccaatcagctttgtgaatattagagaattgggccactcctatatcaagaaaagttggatcttgttcataggtaaagtagaaagaaggcatg |
113 |
Q |
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| T |
30818188 |
gcaaaggatccaatcagctttgtgaatattagagaattgggccactcctatatcaagaaaagttggatcttgttcataggtaaagtagaaagaaggcatg |
30818287 |
T |
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| Q |
114 |
tccctaggttgtaattgaggaagtgcaggaagagtaatctcttgttcaacaaagggaggtttcaactttcccaaatatacatgatagt |
201 |
Q |
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| T |
30818288 |
tccctaggttgtaattgaggaagtgcaggaagagtaatctcttgttcaacaaagggaggtttcaactttcccaaatgaacatgatagt |
30818375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 30860198 - 30860384
Alignment:
| Q |
15 |
caaaggatccaatcagctttgtgaatattagagaattgggccactcctatatcaagaaaagttggatcttgttcataggtaaagtagaaagaaggcatgt |
114 |
Q |
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| T |
30860198 |
caaaggatccaatcagctttgtgaatattagagaactgagccactactaaatcaagaaaagttggatcttcttcatatgtaaagtagaaacaaggcatgt |
30860297 |
T |
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| Q |
115 |
ccctaggttgtaattgaggaagtgcaggaagagtaatctcttgttcaacaaagggaggtttcaactttcccaaatatacatgatagt |
201 |
Q |
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| T |
30860298 |
ccctatgctgtaattgaggaagtgcaggaagagaaatctcttgctcagcaaagggaggtttcaactttcccaaatgaacatgatagt |
30860384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 30855987 - 30856130
Alignment:
| Q |
14 |
gcaaaggatccaatcagctttgtgaatattagagaattgggccactcctatatcaagaaaagttggatcttgttcataggtaaagtagaaagaaggcatg |
113 |
Q |
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| T |
30855987 |
gcaaaggatccaatcagctttacaaatgttagaaaactgacccactgctagctcaagaaacgttggatctttttcataagttaatacaaaagaaggcatg |
30856086 |
T |
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| Q |
114 |
tccctaggttgtaattgaggaagtgcaggaagagtaatctcttg |
157 |
Q |
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| T |
30856087 |
tccctatgttgtagttgaggaagcactggaagtgaaatctcttg |
30856130 |
T |
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