View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10271_low_138 (Length: 213)

Name: NF10271_low_138
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10271_low_138
NF10271_low_138
[»] chr5 (2 HSPs)
chr5 (1-207)||(12540646-12540852)
chr5 (37-207)||(28385331-28385501)
[»] chr7 (1 HSPs)
chr7 (1-207)||(3417539-3417745)
[»] chr2 (3 HSPs)
chr2 (1-191)||(13448324-13448514)
chr2 (1-194)||(13454795-13454988)
chr2 (13-189)||(13440173-13440349)
[»] chr4 (3 HSPs)
chr4 (55-188)||(48958159-48958292)
chr4 (15-207)||(48965304-48965496)
chr4 (55-184)||(48912380-48912509)
[»] chr6 (2 HSPs)
chr6 (109-191)||(12590200-12590282)
chr6 (109-189)||(12483497-12483577)
[»] scaffold0536 (2 HSPs)
scaffold0536 (54-191)||(10521-10658)
scaffold0536 (55-191)||(6539-6675)
[»] chr8 (1 HSPs)
chr8 (54-188)||(12641512-12641646)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 12540646 - 12540852
Alignment:
Q  1 attcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacatggccacgttatcattggaactcccgcaccaacagcctctacaattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12540646 attcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacacggccacgttatcattggaactcccgcaccaacagcctctacaattg 12540745  T
Q  101 agtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttttttcctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12540746 agtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttttttccaat 12540845  T
Q  201 gcttctc 207  Q
    | |||||    
T  12540846 gtttctc 12540852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 37 - 207
Target Start/End: Original strand, 28385331 - 28385501
Alignment:
Q  37 aagtgatctccatgacatggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccg 136  Q
    ||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || || |||||||||| ||||||||||||||    
T  28385331 aagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcctctacaattgagttccctccgcaatgtgtcagaaatccccccaccg 28385430  T
Q  137 cagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttttttcctatgcttctc 207  Q
    |||||| ||||||||||  ||| ||||||||||||||||| || || |||||||| ||||| ||| |||||    
T  28385431 cagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctc 28385501  T

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Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 3417745 - 3417539
Alignment:
Q  1 attcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacatggccacgttatcattggaactcccgcaccaacagcctctacaattg 100  Q
    ||||||||||| ||||||||||||||||| ||||| || |||||||||||||  ||||||||||||||||||||||| |||||||||||||| |||| ||    
T  3417745 attcctcggacttgtgttattagtttctcattgaacaattgatctccatgacccggccacgttatcattggaactcctgcaccaacagcctcaacaaatg 3417646  T
Q  101 agtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttttttcctat 200  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| ||    
T  3417645 agttccccccacaatgtgtcataaatccccctaccgcagggtggctcaatatctgaacctgtggggcccaacccctaacgatcaaacccttctttccaat 3417546  T
Q  201 gcttctc 207  Q
    | |||||    
T  3417545 gtttctc 3417539  T

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Target: chr2 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 13448324 - 13448514
Alignment:
Q  1 attcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacatggccacgttatcattggaactcccgcaccaacagcctctacaattg 100  Q
    ||||||||||  |||||||| |||||||| ||| | || ||||||||||||   |||||||||||||||||||||||||||| ||||||||||||  |||    
T  13448324 attcctcggaattgtgttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctctacggttg 13448423  T
Q  101 agtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaaccctt 191  Q
    |||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448424 agttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaaccctt 13448514  T

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Target: chr2; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 13454795 - 13454988
Alignment:
Q  1 attcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacatggccacgttatcattggaactcccgcaccaacagcctctacaattg 100  Q
    |||||||| || ||||||||||||||||||||| | || |||||||||||   |||||||||||||||||||||||||   | |||||||||||| ||||    
T  13454795 attcctcgaacttgtgttattagtttctcgttgtagaattgatctccatggactggccacgttatcattggaactcccatgctaacagcctctacgattg 13454894  T
Q  101 agtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttttt 194  Q
    |||| ||||| ||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13454895 agttccccccgcaatgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatgatcaaacccttttt 13454988  T

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Target: chr2; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 13440173 - 13440349
Alignment:
Q  13 tgtgttattagtttctcgttgaataagtgatctccatgacatggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccac 112  Q
    |||||||  |||||||||||| | || ||||||||||||   |||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |    
T  13440173 tgtgttaccagtttctcgttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagactctacaattgagttccccccgc 13440272  T
Q  113 aatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaaccc 189  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  13440273 aatgcgtcataaatccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaaccc 13440349  T

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Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 48958159 - 48958292
Alignment:
Q  55 ggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatct 154  Q
    |||||||| ||||||||||| ||||| | ||||||||| ||| | ||||| | ||| ||||||||||||||| | ||||| |||  ||||||||  |||     
T  48958159 ggccacgtgatcattggaacccccgcgctaacagcctccacagtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatca 48958258  T
Q  155 taacctgtggggcccaacccctaatgatcaaacc 188  Q
     ||| ||||||||||| |||||||||||||||||    
T  48958259 aaacttgtggggcccaccccctaatgatcaaacc 48958292  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 48965304 - 48965496
Alignment:
Q  15 tgttattagtttctcgttgaataagtgatctccatgacatggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaa 114  Q
    |||||| ||||| |||||| | || || ||||||||  | ||||| || ||||| ||||| ||||||||||||||||| ||  | ||||| |  ||||||    
T  48965304 tgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcggaacccccgcaccaacagcctccactgtggagttccaaccacaa 48965403  T
Q  115 tgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttttttcctatgcttctc 207  Q
    || ||||||||  | ||||| || ||||||||||  |||  |||||| || |||||||||||||| ||||||||||| ||||| ||| |||||    
T  48965404 tgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataatcaaacccttctttccaatgtttctc 48965496  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 55 - 184
Target Start/End: Complemental strand, 48912509 - 48912380
Alignment:
Q  55 ggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatct 154  Q
    |||||||| ||||||||||| || |||| ||| ||||| ||| | || || | ||||||||||||||||||| | ||||| || | ||||||||  |||     
T  48912509 ggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatca 48912410  T
Q  155 taacctgtggggcccaacccctaatgatca 184  Q
    |||||||||| ||||||||| |||| ||||    
T  48912409 taacctgtggagcccaacccttaataatca 48912380  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 12590282 - 12590200
Alignment:
Q  109 ccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaaccctt 191  Q
    |||||||||||||||||  | ||||| |||  ||||||||  ||| | || ||||||||||||||||||||||||||||||||    
T  12590282 ccacaatgtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaatgatcaaaccctt 12590200  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 189
Target Start/End: Complemental strand, 12483577 - 12483497
Alignment:
Q  109 ccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaaccc 189  Q
    ||||| || ||||||||| | ||||| |||||||||||||| |||   |||||||| ||||| ||||| ||||| ||||||    
T  12483577 ccacagtgagtcataaatgcacccactgcagggtggctcaaaatcagtacctgtggtgcccaccccctgatgattaaaccc 12483497  T

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Target: scaffold0536 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 191
Target Start/End: Complemental strand, 10658 - 10521
Alignment:
Q  54 tggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatc 153  Q
    ||||||||| ||||||||||| || |||| ||| ||||| ||  | || || | ||||||||||||||||||  | |||||  ||| |||||| |  |||    
T  10658 tggccacgtgatcattggaacccctgcactaaccgcctccacggtggaattccacccacaatgtgtcataaacgcacccacaacagtgtggcttagaatc 10559  T
Q  154 ttaacctgtggggcccaacccctaatgatcaaaccctt 191  Q
     ||||||| |||||||||||| |||| |||||||||||    
T  10558 ataacctgaggggcccaacccttaataatcaaaccctt 10521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 6675 - 6539
Alignment:
Q  55 ggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatct 154  Q
    |||||||| ||||| ||||| || |||| ||||||||| ||| | || || | ||||||||| ||||||||  | ||||  ||   ||||||||| |||     
T  6675 ggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccagagctttgtggctcaaaatca 6576  T
Q  155 taacctgtggggcccaacccctaatgatcaaaccctt 191  Q
    |||| ||||| |||||||||||||| |||||||||||    
T  6575 taacttgtggagcccaacccctaataatcaaaccctt 6539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 188
Target Start/End: Complemental strand, 12641646 - 12641512
Alignment:
Q  54 tggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatc 153  Q
    ||||||||| ||||||||||  || |||| |||||||||||| |  |||||   ||| ||||| ||||| ||| | ||||| |||| |||||| || |||    
T  12641646 tggccacgtgatcattggaatccctgcactaacagcctctaccaaggagttcgacccgcaatgcgtcatgaatgcacccacagcagcgtggcttaaaatc 12641547  T
Q  154 ttaacctgtggggcccaacccctaatgatcaaacc 188  Q
     | || |||||||||||  |||||||||| |||||    
T  12641546 attacttgtggggcccactccctaatgataaaacc 12641512  T

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