View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_14 (Length: 458)
Name: NF10271_low_14
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 85 - 458
Target Start/End: Original strand, 50505112 - 50505485
Alignment:
| Q |
85 |
tcatcaacaagatcaaattcaaatcaaccctaaatggaaatcccaagaacaacaacaaatctactccaccaagctccgtcaagccataacaagagtcaac |
184 |
Q |
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| T |
50505112 |
tcatcaacaagatcaaattcaaatcaaccctaaatggaaatcccaagaacaacaacaaatctactccaccaagctccgtcaagccataacaagagtcaac |
50505211 |
T |
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| Q |
185 |
tcatcatccaccccgcgccgaggaaaagccgttcgagaagccgctgatagagctctggcggtgacggccagaggaagaactcgttggagccggaccattc |
284 |
Q |
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| T |
50505212 |
tcatcatccaccccgcgccgaggaaaagccgttcgagaagccgctgatagagctctggcggtgacggccagaggaagaactcgttggagccggaccattc |
50505311 |
T |
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| Q |
285 |
taatgacccggctcaagatcaagtttagtaagaaaaaacctaacagtgtaacggcgctgccgtcaaccaggtcaaagaagtcaatggtcaatgttttctg |
384 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||| | |
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| T |
50505312 |
taatgacccggctcaagatcaagtttaggaagaaaaaacctaacagggtaacggcgctgccgtcaactaggtcaaagaagtcaagggtcaatgttttccg |
50505411 |
T |
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| Q |
385 |
gttgaagggaaaggtgttaccaagtatgcaaaggaaagtatggtggcttggagggttagttcctggttgcaaaa |
458 |
Q |
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| T |
50505412 |
gttgaagggaaaggtagtaccaagtatgcaaaggaaagtaaggtttcttggagggttggttcctggttgcaaaa |
50505485 |
T |
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