View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_141 (Length: 208)
Name: NF10271_low_141
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_141 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 40110765 - 40110942
Alignment:
| Q |
12 |
agagaagaagcagtgcattttttcttcggagccatgaaactcttgaatcatctccgaaacctaaacaacggtatcacaatccaccaccacattctccgta |
111 |
Q |
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| T |
40110765 |
agagaagaagcagtgcattttttcttcggagccatgaaactcatgaatcatctccgaaacctaaacaacggtatcacaatccaccaccacattctccgta |
40110864 |
T |
|
| Q |
112 |
atcgatttcaccctctcttcttcaactaccccaaattcttctccgattcttcattgcctcaacaacccaccactcctc |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40110865 |
atcgatttcaccctctcttcttcaactaccccaaattcttctccgattcttcattgcctcaacaacccaccactcctc |
40110942 |
T |
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