View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10271_low_142 (Length: 207)

Name: NF10271_low_142
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10271_low_142
NF10271_low_142
[»] scaffold1064 (1 HSPs)
scaffold1064 (89-191)||(2476-2578)
[»] chr4 (5 HSPs)
chr4 (41-118)||(9238771-9238848)
chr4 (116-191)||(9238548-9238624)
chr4 (89-186)||(5706756-5706853)
chr4 (89-181)||(9880874-9880966)
chr4 (57-186)||(26904888-26905012)
[»] chr8 (1 HSPs)
chr8 (90-191)||(37787068-37787169)
[»] chr2 (3 HSPs)
chr2 (90-191)||(301926-302027)
chr2 (72-186)||(38099609-38099723)
chr2 (72-191)||(3461355-3461474)
[»] chr3 (2 HSPs)
chr3 (89-186)||(18641420-18641517)
chr3 (89-183)||(34982935-34983029)
[»] chr7 (2 HSPs)
chr7 (88-186)||(296659-296757)
chr7 (76-185)||(30380226-30380335)
[»] chr6 (2 HSPs)
chr6 (72-166)||(29011197-29011291)
chr6 (90-186)||(28248748-28248844)
[»] chr5 (1 HSPs)
chr5 (96-191)||(14233709-14233804)
[»] scaffold0038 (1 HSPs)
scaffold0038 (90-186)||(48910-49006)
[»] chr1 (1 HSPs)
chr1 (68-124)||(44536443-44536499)


Alignment Details
Target: scaffold1064 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 89 - 191
Target Start/End: Complemental strand, 2578 - 2476
Alignment:
Q  89 tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgaga 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2578 tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacattgaga 2479  T
Q  189 att 191  Q
    |||    
T  2478 att 2476  T

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Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 9238848 - 9238771
Alignment:
Q  41 caaacttacaaaaagccaacctgttattgcgctctcatcatgtaaatctgagtacattgcaggtacatttgctacatg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9238848 caaacttacaaaaagccaacctgttattgcgctctcatcatgtgaatctgagtacattgcaggtacatttgctacatg 9238771  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 9238624 - 9238548
Alignment:
Q  116 atgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctc-taacactgagaatt 191  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  9238624 atgtcaagctttgtggttggattcatcaatgaaagagattaagtgtgaagtgatgaagcctcttaacactgagaatt 9238548  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 89 - 186
Target Start/End: Original strand, 5706756 - 5706853
Alignment:
Q  89 tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactga 186  Q
    |||||||||| |||| ||||||||||| |||||||| || ||| |||||||||  ||||||||||| |||||||||||||| |||||||| |||||||    
T  5706756 tgagtacattacaggaacatttgctacttgtcaagcattatggctggattcagtgatgaaagagctcaagtgtgaagtgataaagcctctgacactga 5706853  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 181
Target Start/End: Original strand, 9880874 - 9880966
Alignment:
Q  89 tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaac 181  Q
    |||||| |||| ||| |||||| |||| |||||| |||||||||| |||||||  |||||||||||||| |||||| |  |||||||||||||    
T  9880874 tgagtatattgtaggaacattttctacttgtcaaactttgtggttagattcagtgatgaaagagcttaaatgtgaaattgtgaagcctctaac 9880966  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 186
Target Start/End: Original strand, 26904888 - 26905012
Alignment:
Q  57 caacctgttattgcgctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagctta 156  Q
    |||||||||| ||| || ||||| ||| ||  |||||| |||||| ||| ||||| ||||||||||||  | |||||||||||||  ||||||||| | |    
T  26904888 caacctgttagtgcactttcatcctgtgaagttgagtaaattgcaagtatatttgatacatgtcaagccat-tggttggattcagtgatgaaagagatca 26904986  T
Q  157 agtgtgaagtgatgaagcctctaacactga 186  Q
    |||| ||    ||||| |||||||||||||    
T  26904987 agtgcga----atgaaacctctaacactga 26905012  T

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Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 37787169 - 37787068
Alignment:
Q  90 gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaa 189  Q
    |||||||||||||| ||||||||||| |||||||| || ||| || ||||||  ||||| || |||||||||||||||||||||||||||||||||| ||    
T  37787169 gagtacattgcaggaacatttgctacttgtcaagcattatggctgaattcagtgatgaaggaacttaagtgtgaagtgatgaagcctctaacactgaaaa 37787070  T
Q  190 tt 191  Q
    ||    
T  37787069 tt 37787068  T

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Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 301926 - 302027
Alignment:
Q  90 gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaa 189  Q
    |||||||||||||| ||||||||||| |||||||| || ||| || ||||||  ||||| || |||||||||||||||||||||||||||||||||| ||    
T  301926 gagtacattgcaggaacatttgctacttgtcaagcattatggctgaattcagtgatgaaggaacttaagtgtgaagtgatgaagcctctaacactgaaaa 302025  T
Q  190 tt 191  Q
    ||    
T  302026 tt 302027  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 38099723 - 38099609
Alignment:
Q  72 ctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatga 171  Q
    ||||||| |||| ||  |||||||||||||||| ||||||| | |||||||||| ||| | ||||||||   ||||||||||| ||||||||||||||||    
T  38099723 ctctcattatgtgaagttgagtacattgcaggtgcatttgcaatatgtcaagctctgttgctggattcaatgatgaaagagctcaagtgtgaagtgatga 38099624  T
Q  172 agcctctaacactga 186  Q
    | |||||||||||||    
T  38099623 aacctctaacactga 38099609  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 191
Target Start/End: Original strand, 3461355 - 3461474
Alignment:
Q  72 ctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatga 171  Q
    |||||||||||| ||   ||||||||  | ||||| |||||||| ||||||||  | |||||||||||||  ||||| ||  ||||||||||||||||||    
T  3461355 ctctcatcatgtgaagaagagtacataactggtacttttgctacttgtcaagcactatggttggattcagtgatgaaggaatttaagtgtgaagtgatga 3461454  T
Q  172 agcctctaacactgagaatt 191  Q
    ||||||||||||||| ||||    
T  3461455 agcctctaacactgaaaatt 3461474  T

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Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 18641517 - 18641420
Alignment:
Q  89 tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactga 186  Q
    |||||||||| |||| ||||||||||| |||||||| || ||| |||||||||  ||||||||||| |||||||||||||| |||||||| |||||||    
T  18641517 tgagtacattacaggaacatttgctacttgtcaagcattatggctggattcagtgatgaaagagctcaagtgtgaagtgataaagcctctgacactga 18641420  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 183
Target Start/End: Original strand, 34982935 - 34983029
Alignment:
Q  89 tgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacac 183  Q
    |||||| |||||| | ||||||||||| ||||||| ||| |||||||| | ||| ||||||||||| |||||||||||| |||||||||||||||    
T  34982935 tgagtatattgcatgaacatttgctacttgtcaagttttatggttggaattagcgatgaaagagctcaagtgtgaagtggtgaagcctctaacac 34983029  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 186
Target Start/End: Original strand, 296659 - 296757
Alignment:
Q  88 ctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactga 186  Q
    |||||||||||||||| ||||||||||| | ||||||  | ||| |||||||||  || |||||||| ||||||||||||||||||||||| |||||||    
T  296659 ctgagtacattgcaggaacatttgctacttttcaagcactatggctggattcagtgataaaagagctcaagtgtgaagtgatgaagcctctgacactga 296757  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 30380226 - 30380335
Alignment:
Q  76 catcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcc 175  Q
    |||||||| ||  ||| ||||||| ||| || |||||||| ||||||||| | || ||||||||||  ||||||||||| ||||||||||||||||| ||    
T  30380226 catcatgtgaagttgaatacattgaaggaacttttgctacttgtcaagctctatgattggattcagtgatgaaagagctcaagtgtgaagtgatgaaacc 30380325  T
Q  176 tctaacactg 185  Q
    ||||||||||    
T  30380326 tctaacactg 30380335  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 29011291 - 29011197
Alignment:
Q  72 ctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagt 166  Q
    |||||||| ||| || ||||||| |||||||| | |||||||||||||||||||||||||||||||||||  ||||| || || |||||||||||    
T  29011291 ctctcatcttgtgaagctgagtatattgcaggaatatttgctacatgtcaagctttgtggttggattcagtgatgaatgaactcaagtgtgaagt 29011197  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 28248748 - 28248844
Alignment:
Q  90 gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactga 186  Q
    |||||||| || || || |||||||| || ||| | || ||| |||||| ||  ||||||||||| |||||||||||| | |||||||| |||||||    
T  28248748 gagtacatagctggaacttttgctacttgccaaacattatggctggatttagtgatgaaagagctcaagtgtgaagtggtaaagcctctgacactga 28248844  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 14233709 - 14233804
Alignment:
Q  96 attgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaatt 191  Q
    |||||| | ||||||||||| ||||||||| ||||||| |||||||  ||||| |||||||| ||||||||  ||||||||||||| || ||||||    
T  14233709 attgcaagaacatttgctacttgtcaagctatgtggttagattcagtgatgaaggagcttaaatgtgaagtagtgaagcctctaaccctcagaatt 14233804  T

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Target: scaffold0038 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 48910 - 49006
Alignment:
Q  90 gagtacattgcaggtacatttgctacatgtcaagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactga 186  Q
    |||||||| || || || |||||||| || ||| | || ||| |||||| ||  ||||||||||| |||||||||||| | |||||||| |||||||    
T  48910 gagtacatagctggaacttttgctacttgccaaacattatggctggatttagtgatgaaagagctcaagtgtgaagtggtaaagcctctgacactga 49006  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 44536499 - 44536443
Alignment:
Q  68 tgcgctctcatcatgtaaatctgagtacattgcaggtacatttgctacatgtcaagc 124  Q
    ||||||||||||  ||||| | |||||||||||||  ||||||||||| ||||||||    
T  44536499 tgcgctctcatccagtaaaccagagtacattgcagaaacatttgctacttgtcaagc 44536443  T

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