View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10271_low_144 (Length: 205)

Name: NF10271_low_144
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10271_low_144
NF10271_low_144
[»] chr8 (1 HSPs)
chr8 (18-192)||(15744897-15745071)
[»] scaffold0190 (1 HSPs)
scaffold0190 (18-192)||(4451-4625)
[»] chr4 (8 HSPs)
chr4 (18-69)||(7615239-7615290)
chr4 (19-73)||(7606226-7606280)
chr4 (23-73)||(7637058-7637108)
chr4 (26-59)||(39082360-39082393)
chr4 (18-58)||(7656227-7656267)
chr4 (26-73)||(39097691-39097738)
chr4 (26-72)||(39088014-39088060)
chr4 (26-72)||(39091405-39091451)
[»] chr7 (2 HSPs)
chr7 (19-73)||(8941812-8941866)
chr7 (18-69)||(8936171-8936222)
[»] chr3 (2 HSPs)
chr3 (18-60)||(40147453-40147495)
chr3 (20-60)||(8102446-8102486)
[»] chr6 (1 HSPs)
chr6 (20-69)||(6500490-6500539)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 15745071 - 15744897
Alignment:
Q  18 caggttttccccaaccaaaatcattaccataaacatcaaaccagggtgaactactacccactaatgttttacaattgaacttagcatcagtaataaaact 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15745071 caggttttccccaaccaaaatcattgccataaacatcaaaccagggtgaactactacccactaatgttttacaattgaacttagcatcagtaataaaact 15744972  T
Q  118 aggtgttttcaaccaactctcatattcatttttcaacatctcatcagattgcaaagcaatcatcttgttcatctc 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15744971 aggtgttttcaaccaactctcatattcatttttcaacatctcatcagattgcaaagcaatcatcttgttcatctc 15744897  T

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Target: scaffold0190 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 4451 - 4625
Alignment:
Q  18 caggttttccccaaccaaaatcattaccataaacatcaaaccagggtgaactactacccactaatgttttacaattgaacttagcatcagtaataaaact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||| || |   || ||||  | ||  |||  | || ||   || | ||||||    
T  4451 caggttttccccaaccaaaatcattaccataaacatcaaaccaaggagaaccaccaatgaccaatgaatcactgttggccataccagaggtgacaaaact 4550  T
Q  118 aggtgttttcaaccaactctcatattcatttttcaacatctcatcagattgcaaagcaatcatcttgttcatctc 192  Q
     |||||| | |||||| | ||||| | |||||||||| |||||||||| |||||| |||||||||||||||||||    
T  4551 cggtgttattaaccaattttcatagtgatttttcaacctctcatcagagtgcaaaacaatcatcttgttcatctc 4625  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 7615239 - 7615290
Alignment:
Q  18 caggttttccccaaccaaaatcattaccataaacatcaaaccagggtgaact 69  Q
    |||| |||||||||||||||||||||||||||||||||||||| || |||||    
T  7615239 caggctttccccaaccaaaatcattaccataaacatcaaaccacggagaact 7615290  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 7606226 - 7606280
Alignment:
Q  19 aggttttccccaaccaaaatcattaccataaacatcaaaccagggtgaactacta 73  Q
    |||||||||||| || |||||||||||||||||||||||||| || |||||||||    
T  7606226 aggttttccccatccgaaatcattaccataaacatcaaaccatggagaactacta 7606280  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 7637058 - 7637108
Alignment:
Q  23 tttccccaaccaaaatcattaccataaacatcaaaccagggtgaactacta 73  Q
    |||||||| ||||||||||||||||||||||||||||| || |||||||||    
T  7637058 tttccccatccaaaatcattaccataaacatcaaaccatggagaactacta 7637108  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 39082360 - 39082393
Alignment:
Q  26 ccccaaccaaaatcattaccataaacatcaaacc 59  Q
    ||||||||||||||||||||||||||||||||||    
T  39082360 ccccaaccaaaatcattaccataaacatcaaacc 39082393  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 7656267 - 7656227
Alignment:
Q  18 caggttttccccaaccaaaatcattaccataaacatcaaac 58  Q
    |||| |||||||| |||||||||||||||||||||||||||    
T  7656267 caggctttccccatccaaaatcattaccataaacatcaaac 7656227  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 39097691 - 39097738
Alignment:
Q  26 ccccaaccaaaatcattaccataaacatcaaaccagggtgaactacta 73  Q
    ||||||||||| ||||||||||||||||||||||  || |||||||||    
T  39097691 ccccaaccaaagtcattaccataaacatcaaaccttggagaactacta 39097738  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 39088014 - 39088060
Alignment:
Q  26 ccccaaccaaaatcattaccataaacatcaaaccagggtgaactact 72  Q
    |||||||||||||||||| |||||||||||||||  || ||||||||    
T  39088014 ccccaaccaaaatcattatcataaacatcaaaccttggagaactact 39088060  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 39091405 - 39091451
Alignment:
Q  26 ccccaaccaaaatcattaccataaacatcaaaccagggtgaactact 72  Q
    |||||||||||||||||||| |||||||||||||  || ||||||||    
T  39091405 ccccaaccaaaatcattaccgtaaacatcaaacctcggagaactact 39091451  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 8941866 - 8941812
Alignment:
Q  19 aggttttccccaaccaaaatcattaccataaacatcaaaccagggtgaactacta 73  Q
    |||||||||||| || |||||||||||||||||||||||||| || |||||||||    
T  8941866 aggttttccccatccgaaatcattaccataaacatcaaaccatggagaactacta 8941812  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 8936222 - 8936171
Alignment:
Q  18 caggttttccccaaccaaaatcattaccataaacatcaaaccagggtgaact 69  Q
    |||| |||||||| ||||||||||||||||||||||||||||| || |||||    
T  8936222 caggctttccccatccaaaatcattaccataaacatcaaaccacggagaact 8936171  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 40147495 - 40147453
Alignment:
Q  18 caggttttccccaaccaaaatcattaccataaacatcaaacca 60  Q
    |||||| |||||| |||||||||||||||||||||||||||||    
T  40147495 caggttctccccatccaaaatcattaccataaacatcaaacca 40147453  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 8102446 - 8102486
Alignment:
Q  20 ggttttccccaaccaaaatcattaccataaacatcaaacca 60  Q
    ||||||||||| ||||||| ||| |||||||||||||||||    
T  8102446 ggttttccccatccaaaattattgccataaacatcaaacca 8102486  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 6500490 - 6500539
Alignment:
Q  20 ggttttccccaaccaaaatcattaccataaacatcaaaccagggtgaact 69  Q
    ||||| ||||| ||||||||||||||||||| ||||||||| || |||||    
T  6500490 ggtttcccccatccaaaatcattaccataaatatcaaaccacggggaact 6500539  T

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