View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10271_low_16 (Length: 444)
Name: NF10271_low_16
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 44826515 - 44826938
Alignment:
| Q |
17 |
acatcagggtcacaatctcttgaagctgcaaaacatggacagtgtcgacttctacactgactcttagtacactgacatcctccaaatagatttttacaga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44826515 |
acatcagggtcacaatctcttgaagctgcaaaacatggacagtgtcgacttctacactgactcttagtacactgacatcctccaaatcgatttttacaga |
44826614 |
T |
|
| Q |
117 |
gctttgaacacctgaaggtagaaaatataactgatcacattgaaaacatagttgttttccatcgaaaagtaacataattaaatgaaaattgacataccca |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44826615 |
gctttgaacacctgaaggtaaaaaatataactgatcacattgaaaacatagttgttttccatcgaaaagtaacataattaaatgaaaattgacataccca |
44826714 |
T |
|
| Q |
217 |
caatatttttcacagcaataaccattaagacgacatgtacattgctttccacacgccccctcacattcacaaggtgtatagtgcttttccagtttgtttt |
316 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44826715 |
caatatttttcacagcaaaaaccattaagacgacatggacattgctttccacacgccccctcacattcacaaggtgtatagtgcttttccagtttgtttt |
44826814 |
T |
|
| Q |
317 |
tctcatcggtatttcttcttcttttccatttggatggaagtccacaagattttgaagaatatttgaacttcttagatttgctctttcttgacatcgacct |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44826815 |
tctcatcggtatttcttcttcttttccatttggatggaagtccacaagattttgaagaatatttgaacttcttagatttgctctttcttgacatcgacct |
44826914 |
T |
|
| Q |
417 |
tgactttgatgtccatctcattgtc |
441 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
44826915 |
tgactttgatg-gcatctcattgtc |
44826938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University