View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_18 (Length: 438)
Name: NF10271_low_18
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 427
Target Start/End: Original strand, 44890925 - 44891335
Alignment:
| Q |
17 |
acccacttagagcacctcgcatatactcctactccaccgacactcgctccatgacagaaggtttacgattcagcattttaaccagcaaactactgcttcc |
116 |
Q |
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| T |
44890925 |
acccacttagagcaccttgcatatactcctactccaccgacactcgctccatgacagaaggtttacgattcggcattttaaccagcaaactgctgcttcc |
44891024 |
T |
|
| Q |
117 |
tcaaaaaactagtttaatttcttgatattaaacagataaaaacgtacactacactttgatcttagccaaaagaccaagaaaaggtggagaaaggtatgaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44891025 |
tcaaaaaactagtttaatttcttgatattaaacagataaaaacgtacactacactttgatcttagccaaaagaccaagaaaaggtggagaaaggtatgaa |
44891124 |
T |
|
| Q |
217 |
ttatatgtggtactcacttccacttttatatcatacatccatttactcactctcttgactacacgatgtaggactaactagtattgttcagcaccaattt |
316 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44891125 |
ttatatgtggtactcacttctacttttatatcatacatccatttactcactctcttgactacacgatgtaggactaactagtattgttcagcaccaactt |
44891224 |
T |
|
| Q |
317 |
gcttcgtggactcacttggtagactatattcagtctttcttctcttatctatattcgttttcttccaatgttcttcactacatccatcattaagaatatc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | |
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| T |
44891225 |
gcttcgtggactcacttggtagactatattcagtctttcttctcttatctatattcgttttcttccaatgttcttcaatacatccatcattaagagtacc |
44891324 |
T |
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| Q |
417 |
agaatattcat |
427 |
Q |
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| T |
44891325 |
agaatattcat |
44891335 |
T |
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