View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10271_low_19 (Length: 437)
Name: NF10271_low_19
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 54234383 - 54233987
Alignment:
| Q |
18 |
ataagtagcaatactttttaaaaatggattccatcaatcttatatttgtgtttatctctttcaaacttcctttggctcaactcctgtttgatgaggtaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54234383 |
ataagtagcaatactttttaaaaatggattccatcaatcttatatttgtgtttatctctttcaaacttcctttggctcaactcctgtttgatgaggtaat |
54234284 |
T |
|
| Q |
118 |
aatagagtatggggttctggtggtgttgttcagagatggatggaaaaggctttggtctgatagcagcaacctgggtacagcattattaccatgaatgaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54234283 |
aatagagtatggggttctggtggtgttgttcagagatggatggaaaaggctttggtatgatagcagcaacctgggtacagcattattaccatgaat---- |
54234188 |
T |
|
| Q |
218 |
cacgtgtatgagttaggaaagcaatggacgtgaaattaggcatgaggtatgcaatgtaggagcatttcttcttatcaatgttactattaaagattaatca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54234187 |
cacgtgtatgagttaggaaagcaatggacgtgaaattaggcatgaggtatgcaatgtaggagcatttcttcttatcaatgttactattaaagatgaatca |
54234088 |
T |
|
| Q |
318 |
aatgccataacttgagcctccatttcatagaatttatttctcacatgctgtgccagattgaacttacaagataaattctcggcaaaatacgctttaattt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
54234087 |
aatgccataacttgagcctccatttcatagaatttatttctcacatgttgtgccagattgaacttacaagataaatgctcggcaaaatacgctttaattt |
54233988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University