View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_2 (Length: 643)
Name: NF10271_low_2
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 622; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 1 - 626
Target Start/End: Original strand, 44209945 - 44210570
Alignment:
| Q |
1 |
aggatagtcaaacaatcggagacagaaaccaaggaaaactattggaaaatcaataagagtgagttaggtgtaaatgatcaactttgaaccaaaatacatg |
100 |
Q |
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| T |
44209945 |
aggatagtcaaacaatcggagacagaaaccaaggaaaactattggaaaatcaataagagtgagttaggtgtaaatgatcaactttgaaccaaaatacatg |
44210044 |
T |
|
| Q |
101 |
tcaagactgtatgacatcaattgacccatgaagccaacccacctagtgggagaaagcgtagttgttattgcattgaattaaatttcaacactttgtgcag |
200 |
Q |
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| T |
44210045 |
tcaagactgtatgacatcaattgacccatgaagccaacccacctagtgggagaaagcgtagttgttattgcattgaattaaatttcaacactttgtgcag |
44210144 |
T |
|
| Q |
201 |
cattattcacaatcatcagcacatcaataacatggtgaggcttggatagggcagattcatctctaggaccatcaattatcacatgtcaattcatctacaa |
300 |
Q |
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| T |
44210145 |
cattattcacaatcatcagcacatcaataacatggtgaggcttggatagggcagattcatctctaggaccatcaattatcacatgtcaattcatctacaa |
44210244 |
T |
|
| Q |
301 |
aatccaaaattaacatttgtgtatcacaaactacaggaccaagatctgcatggttgactctcactgcttgctaatttcctaatgtccaaaatttacaatt |
400 |
Q |
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| T |
44210245 |
aatccaaaattaacatttgtgtatcacaaactacaggaccaagatctgcatggttgactctcactgcttgctaatttcctaatgtccaaaatttacaatt |
44210344 |
T |
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| Q |
401 |
cttatttctctaggctgtctattctgctgtggcattttaaaattccagaaatcttactattttgttggttcattccaggatattggggattcctggagcg |
500 |
Q |
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| T |
44210345 |
cttatttctctaggctgtctattctgctgtggcattttaaaattccagaaatcttaccattttgttggttcattccaggatattggggattcctggagcg |
44210444 |
T |
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| Q |
501 |
tcgagtctgtgaaggacagtcattagaagaatgccctgtttcttgacagtgcgaacaaactgcttgccttgggttggtatgatgggcgttgctggttgat |
600 |
Q |
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| T |
44210445 |
tcgagtctgtgaaggacagtcattagaagaatgccctgtttcttgacagtgcgaacaaactgcttgccttgggttggtatgatgggcgttgctggttgat |
44210544 |
T |
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| Q |
601 |
gcagtagaccttgggttggtatgatg |
626 |
Q |
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| T |
44210545 |
gcagtagaccttgggttggtatgatg |
44210570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 44210553 - 44210593
Alignment:
| Q |
567 |
ccttgggttggtatgatgggcgttgctggttgatgcagtag |
607 |
Q |
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| T |
44210553 |
ccttgggttggtatgatggacgttgctggttgatgcagtag |
44210593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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