View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_20 (Length: 434)
Name: NF10271_low_20
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Original strand, 27929066 - 27929472
Alignment:
| Q |
17 |
cttctgaaattgacagttatttgtctgaagaatggaaagataggaagaaggatacatatggagaagacttctcatcaagattcttgaatatgccttttct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27929066 |
cttctgaaattgacagttatttgtctgaagaatggaaagataggaagaaggatacatatggagaagacctctcatcaagattcttgaatatgccttttct |
27929165 |
T |
|
| Q |
117 |
ccccgttgaggtatgttttgcttacattttaacagcatgccgattaatatcagagacaattattctttctttaaacatttatttttgctcaattgttttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27929166 |
ccccgttgaggtatgttttgcttacattttaacagcatgctgattaatatcagagacaattattctttctttaaacatttatttttgctcaattgttttc |
27929265 |
T |
|
| Q |
217 |
tttttgcaagtcccgttaattggcctaaactttgtcgctttttgaatttatttctcgcctatctctggctgatgattaattgagttatcatcgaacaact |
316 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27929266 |
tttttgcaagtcccgttatttggcctaaactttgtcgctttttgaatttatttctcgcctatctctggctgatgattagttgagttatcatcgaacaact |
27929365 |
T |
|
| Q |
317 |
ttctattttctccatttcattgtgtttttactaatgttgtgattgaatgtccttgacaggtaccacagcaggaaaactcatttgattgtggcctcttttt |
416 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27929366 |
ttctattttctccaattcattgtgtttttactaatgttgtgattgaatgtccttgacagataccacagcaggaaaactcatttgattgtggcctcttttt |
27929465 |
T |
|
| Q |
417 |
acttcat |
423 |
Q |
| |
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|||||| |
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|
| T |
27929466 |
gcttcat |
27929472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 28082771 - 28082365
Alignment:
| Q |
17 |
cttctgaaattgacagttatttgtctgaagaatggaaagataggaagaaggatacatatggagaagacttctcatcaagattcttgaatatgccttttct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||| |
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|
| T |
28082771 |
cttctgaaattgacagttatttgtctgaagaatggaaagataggaagaaggatacatatggagaagacctctcatcaagattctttaatatgcattttct |
28082672 |
T |
|
| Q |
117 |
ccccgttgaggtatgttttgcttacattttaacagcatgccgattaatatcagagacaattattctttctttaaacatttatttttgctcaattgttttc |
216 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28082671 |
ccccgttgaggtatgtcttgcttacattttaacagcatgctgattaatatcagagacaattattctttctttaaacatttctttttgctcaattgttttc |
28082572 |
T |
|
| Q |
217 |
tttttgcaagtcccgttaattggcctaaactttgtcgctttttgaatttatttctcgcctatctctggctgatgattaattgagttatcatcgaacaact |
316 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
28082571 |
tttttgcaagtcccattatttggcctaaactttgtcgctttttgaatttatttctcgcctatctctggctgatgattagttgagttatcatcgaacaact |
28082472 |
T |
|
| Q |
317 |
ttctattttctccatttcattgtgtttttactaatgttgtgattgaatgtccttgacaggtaccacagcaggaaaactcatttgattgtggcctcttttt |
416 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28082471 |
ttctattttctccatttgattgtgcttttactaatgttgtgactgaatgtccttgacaggtaccacagcaggaaaactcatttgattgtggcctcttttt |
28082372 |
T |
|
| Q |
417 |
acttcat |
423 |
Q |
| |
|
|||||| |
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|
| T |
28082371 |
gcttcat |
28082365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 255 - 423
Target Start/End: Original strand, 27935335 - 27935503
Alignment:
| Q |
255 |
tttttgaatttatttctcgcctatctctggctgatgattaattgagttatcatcgaacaactttctattttctccatttcattgtgtttttactaatgtt |
354 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
27935335 |
tttttgaatttattcctctcctatctctggctgatgattagttgagttatcatcgaacaactttctattttctccatttgattgtgcttttactaatgtt |
27935434 |
T |
|
| Q |
355 |
gtgattgaatgtccttgacaggtaccacagcaggaaaactcatttgattgtggcctctttttacttcat |
423 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
27935435 |
gtgactgaatgtccttgacaggtaccacagcaggaaaacaaatttgattgtggcctctttttacttcat |
27935503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 27934993 - 27935177
Alignment:
| Q |
19 |
tctgaaattgacagttatttgtctgaagaatggaaagataggaagaaggatacatatggagaagacttctcatcaagattcttgaatatgccttttctcc |
118 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||| ||||||| || ||||| |||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
27934993 |
tctgaaatttacagttatttgtgtgaagaatggaaagagaggaagatgggtacatgtggagaagacctctcatcaagattcttgaatatgcgttttctcc |
27935092 |
T |
|
| Q |
119 |
ccgttgaggtatgttttgcttacattttaacagcatgccgattaatatcagagacaattattctttctttaaacatttatttttg |
203 |
Q |
| |
|
| || ||||| ||||||||||||| ||||||||| |||||| | ||||||||| ||||||||| || ||||||| |||||| |
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|
| T |
27935093 |
aagctgcggtattacttgcttacattttcacagcatgctgattaaaaccagagacaaatattctttcgtttaacatttctttttg |
27935177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 414
Target Start/End: Original strand, 46163458 - 46163502
Alignment:
| Q |
370 |
tgacaggtaccacagcaggaaaactcatttgattgtggcctcttt |
414 |
Q |
| |
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|||||| | |||||||| |||||||||| |||||||||||||||| |
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| T |
46163458 |
tgacagttgccacagcaagaaaactcatatgattgtggcctcttt |
46163502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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