View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_22 (Length: 423)
Name: NF10271_low_22
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 38025067 - 38025479
Alignment:
| Q |
1 |
acaaacaaaaactagatctttcaacaaattcatttatcaagtcatgtcctttgatgtaatatagatttatatgttcacaatatggctgtgaacatccaaa |
100 |
Q |
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| T |
38025067 |
acaaacaaaaactagatctttcaacaaattcatttatcaagtcatgtcctttgatgtaatatagatttatatgttcacaatatggctgtgaacatccaaa |
38025166 |
T |
|
| Q |
101 |
taaatacatagagtatatgtttatgacaaataataagaatgtttcaaattaactctatgatctactatgtttgatgatccaacaaatttgtttaatcatg |
200 |
Q |
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| T |
38025167 |
taaatacatagagtatatgtttattacaaataataagaatgtttcaaattaactctatgatctactatgtttgatgatccaacaaatttgtttaatcatg |
38025266 |
T |
|
| Q |
201 |
gaaacccagtggagaaagatggaggaagtgaaaggaatcaccatctcatactctcttaaccatgatttccatgattaagaaaattcaatggatcaaatta |
300 |
Q |
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| T |
38025267 |
gaaacccagtggagaaagatggaggaagtgagaggaatcaccatctcatactctcttaaccatgatttccatgattaagaaaattcaatggatcaaatta |
38025366 |
T |
|
| Q |
301 |
accaccaccatctttgattctctagatctagaatacaaaaacaaacaaattgaaacgtgttgaatagcaggtagagatgtatttataggatgaaatttag |
400 |
Q |
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| T |
38025367 |
accaccaccatctttgattctctagatctagaatacaaaaacaaacaaaatgaaacgtgttgaatagcaggtagagatgtatttataggatgaaatttag |
38025466 |
T |
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| Q |
401 |
ggtttggcctttg |
413 |
Q |
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| T |
38025467 |
ggtttggcctttg |
38025479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 172 - 328
Target Start/End: Original strand, 38022343 - 38022490
Alignment:
| Q |
172 |
tgatgatccaacaaatttgtttaatcatgg-aaacccagtggagaaagatggaggaagtgaaaggaatcaccatctcatactctcttaaccatgatttcc |
270 |
Q |
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| T |
38022343 |
tgatgatccaacaaatttctttaatcaaggaaaacacagtggagaaagatgaaggaagtgagagta------atctcaaactctcttaactgtgatttcc |
38022436 |
T |
|
| Q |
271 |
atgattaagaaaattcaatggatcaaattaaccaccaccatctttgattctctagatc |
328 |
Q |
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| T |
38022437 |
ctgattaaaaaaattcaatagatc-aattagcctccac---ctttgattctctagatc |
38022490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 405
Target Start/End: Original strand, 38022499 - 38022541
Alignment:
| Q |
363 |
aatagcaggtagagatgtatttataggatgaaatttagggttt |
405 |
Q |
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| T |
38022499 |
aatagcatgtagagttgtatttataggataaaatttagggttt |
38022541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 18234697 - 18234642
Alignment:
| Q |
243 |
atctcatactctcttaaccatgatttccatgattaagaaaattcaatggatcaaat |
298 |
Q |
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|
| T |
18234697 |
atctcatactcccttaagtgtgatttccttgattaaaaaaattcaatggatcaaat |
18234642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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