View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_23 (Length: 421)
Name: NF10271_low_23
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 8226802 - 8226410
Alignment:
| Q |
19 |
atattgaaacaaattgacatatataattgtttgaaaccaacataacatgattagatccaaggtggagaaaaccgcaacactcaatttaattgggttgtta |
118 |
Q |
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| T |
8226802 |
atattgaaacaaattgacatatataattgtttgaaaccaacataacatgattagatccaaggtggagaaaaccgcaacactcaatttaattgggttgtta |
8226703 |
T |
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| Q |
119 |
gttaaaaacagtagtttacaattaaaaaacaaattgttatttcaatgctgcaagagttctagtctaaaaggtttagctcagcttgtttcgaacccggcac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8226702 |
gttaaaaacagtagtttacaattaaaaaacaaattgttattacaatgctgcaagagttctagtctaaaaggtttagctcagcttgtttcgaacccggcac |
8226603 |
T |
|
| Q |
219 |
cttacagctgtcagttttgggtgatgcttgccacttcgtctagagacaaaatagaaaatgcattgcagcagcagatcgagtctatcacctgagagtaata |
318 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
8226602 |
cttatagctgtcagttttgggtgatgcttgccacttcgtctagagacaaaatagaaaatgcattgcagcagcgggtcgagtctatcacctgagagtaata |
8226503 |
T |
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| Q |
319 |
taaaatgtgccttcactaaataacttaagctcttggaattggatggttgattcttattatatggatagattgaaagcaattttctaacctttg |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8226502 |
taaaatgtgccttcactaaataacttaagctcttggaattggatggttgattcttattatatggatagattgaaagcaattttctaacctttg |
8226410 |
T |
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