View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_24 (Length: 417)
Name: NF10271_low_24
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 23 - 406
Target Start/End: Complemental strand, 38882622 - 38882230
Alignment:
| Q |
23 |
gtttcttcgagtcccatcccacttcctgttatagtattcataatca-acaccatttctttctaaaagctataaataagttaactagaaggggcttgtttg |
121 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38882622 |
gtttcttcgattcccatcccacttcctgttatagtattcataatcacacgccatttctttctaaaagctataaataagttaactagaaggggcttgtttg |
38882523 |
T |
|
| Q |
122 |
----------gttacctgaaccaatttggtgcgaaacaaattgaggaataaatcatcaataacccctggcttgtattcattctttggagctgctgcaact |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38882522 |
tgtttgtttggttacctgaaccaatttggtgcgaaacaaattgaggaacaaatcatcaataacccctggcttgtattcactctttggagctgctgcaact |
38882423 |
T |
|
| Q |
212 |
cccacctaattcaaattcaatcannnnnnnnnnnnnnnnnnnaaatttcataatcgcacacgaaaaacaatagcaaaatatgcaaaccgttttgggtccc |
311 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38882422 |
cccacctaattcaaattcaatcaacacacacacacacaca--aaatttcataatcgcacacgaaaaacaatagcaaaatatgcaaaccgttttgggtccc |
38882325 |
T |
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| Q |
312 |
gacgatgaagaggctgaaacgcagaactgacgtatacgaattccattagaacaaagcggtggaacaccaccaacaacaatacctaccgccttcat |
406 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38882324 |
gacgatgaagaggctgaaacgcagaactgacgtttacgaattccattagaacaaagcggtggaacaccaccaacaacaatacctaccgccttcat |
38882230 |
T |
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