View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_25 (Length: 415)
Name: NF10271_low_25
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 47036042 - 47035644
Alignment:
| Q |
1 |
atttgaaaaagtcgcgtaatcaattaggtgattcgtgctgcaatttttgtggtaatgaaattgaatcaattttacatgttctccgcgagtgtctgctagc |
100 |
Q |
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| T |
47036042 |
atttgaaaaagtcgtgtaatcaattaggtgattcgtgctgcaatttttgtggtaatgaaattgaatcaattttacatgttctccgcgagtgtctgctagc |
47035943 |
T |
|
| Q |
101 |
tagggcgatatagatgcatttggctccgtggaaagatcgtgaagctttctttgaaatgtgattttaaggattggttagagttatgtttaagcaaacgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47035942 |
tagggcgatatagatgcatttggctccgtggaaagatcgtgaagctttctttgaaatgtgattttaaggattggttagagttatgtttgagcaaacgcaa |
47035843 |
T |
|
| Q |
201 |
tgagattaatatgtgaattttgtggtctggtgaatgtactatagcttgtcactttttgtggcaatggaagaataaggaggttcgtgttgaaggtttcact |
300 |
Q |
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| T |
47035842 |
tgagattaatatgtgaattttgtggtctggtgaatgtaccatagcttgtcactttttgtggcaatggaagaataaggaggtttgtgttgaaggtttcact |
47035743 |
T |
|
| Q |
301 |
cgccttcatgctcctcgggtgaaataatgtgtttttctcggtagtatgtcaactcatctcaaataaaggaatttgaaaacattgatgctgtcaaaattc |
399 |
Q |
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| T |
47035742 |
cgccttcatgctcctcgggtgaaataatgtgtttttctcggtagtatgtcaactcatctcaaataaaggaatttgaaaacattgatgctgtcaaaattc |
47035644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 311
Target Start/End: Original strand, 36571596 - 36571801
Alignment:
| Q |
108 |
atatagatgcatttggctccgtggaaagatcgtgaagctttctttgaaatgtgattttaaggattggttagagttatgtttaagcaaacgcaatgagatt |
207 |
Q |
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| T |
36571596 |
atatggatgtatttggttccatggaaggatcgcaaagctttctttagaa-gtgattttaaggattggttcgagttaaatttgaacaaaatgaatgaggtt |
36571694 |
T |
|
| Q |
208 |
aatatgtgaatttt---gtggtctggtgaatgtactatagcttgtcactttttgtggcaatggaagaataaggaggttcgtgttgaaggtttcactcgcc |
304 |
Q |
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| T |
36571695 |
agtatgaaaattattgtgtggtctggtgtatgggctataacttgtcactcattgcaacaatgaaagaataagaaggttcatgttgaaggtttcactcgtc |
36571794 |
T |
|
| Q |
305 |
ttcatgc |
311 |
Q |
| |
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|||||| |
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| T |
36571795 |
ctcatgc |
36571801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 168
Target Start/End: Complemental strand, 44495644 - 44495523
Alignment:
| Q |
46 |
tttgtggtaatgaaattgaatcaattttacatgttctccgcgagtgtctgctagctagggcgatatagatgcatttggctccgtggaaagatcgtgaagc |
145 |
Q |
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|||||||||| |||||| ||||||||||||||| ||||| |||||||| |||| ||||| |||||| |||||| ||| | | | || |||||||||| |
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| T |
44495644 |
tttgtggtaacgaaatttaatcaattttacatgctctccacgagtgtccgctaactaggacgatatgaatgcatctggtttcaggaaaggatcgtgaagt |
44495545 |
T |
|
| Q |
146 |
tttctttgaaatgtgattttaag |
168 |
Q |
| |
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||||||||||| ||||||||||| |
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| T |
44495544 |
tttctttgaaa-gtgattttaag |
44495523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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