View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10271_low_26 (Length: 409)

Name: NF10271_low_26
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10271_low_26
NF10271_low_26
[»] chr1 (15 HSPs)
chr1 (11-393)||(41178552-41178914)
chr1 (223-335)||(8381882-8381994)
chr1 (305-360)||(30220242-30220297)
chr1 (261-359)||(11049204-11049301)
chr1 (221-311)||(41516883-41516973)
chr1 (221-278)||(8130854-8130911)
chr1 (221-277)||(15084726-15084782)
chr1 (221-288)||(15478123-15478190)
chr1 (221-288)||(45660871-45660937)
chr1 (303-360)||(3887480-3887538)
chr1 (302-360)||(15515102-15515160)
chr1 (221-279)||(20721046-20721104)
chr1 (305-359)||(28083922-28083975)
chr1 (221-311)||(47322005-47322095)
chr1 (221-311)||(35681826-35681913)
[»] chr2 (17 HSPs)
chr2 (223-360)||(43717240-43717377)
chr2 (251-355)||(21234562-21234666)
chr2 (225-288)||(37649596-37649659)
chr2 (250-340)||(43501068-43501158)
chr2 (221-280)||(7629758-7629817)
chr2 (221-277)||(33047685-33047741)
chr2 (221-280)||(14110582-14110641)
chr2 (249-288)||(15928556-15928595)
chr2 (221-288)||(36374212-36374279)
chr2 (249-288)||(37420319-37420358)
chr2 (226-288)||(40582650-40582712)
chr2 (247-335)||(9943345-9943434)
chr2 (233-290)||(16013831-16013888)
chr2 (307-348)||(43969699-43969740)
chr2 (247-279)||(16519368-16519400)
chr2 (225-277)||(30503109-30503161)
chr2 (247-287)||(42774958-42774998)
[»] chr8 (13 HSPs)
chr8 (221-340)||(15677868-15677987)
chr8 (221-325)||(32994309-32994413)
chr8 (221-288)||(39648267-39648334)
chr8 (221-311)||(41614740-41614830)
chr8 (228-347)||(75626-75745)
chr8 (221-272)||(7533697-7533748)
chr8 (221-288)||(24776215-24776282)
chr8 (249-311)||(8252721-8252782)
chr8 (265-359)||(18355882-18355975)
chr8 (307-360)||(24183748-24183801)
chr8 (221-282)||(44141185-44141246)
chr8 (221-281)||(4554402-4554462)
chr8 (247-295)||(11038104-11038152)
[»] chr5 (13 HSPs)
chr5 (248-332)||(7328699-7328784)
chr5 (221-334)||(39097160-39097273)
chr5 (221-339)||(3043074-3043193)
chr5 (221-311)||(11911908-11911998)
chr5 (221-286)||(15368139-15368204)
chr5 (251-354)||(1102077-1102181)
chr5 (221-332)||(10859898-10860010)
chr5 (221-277)||(38845644-38845700)
chr5 (302-348)||(5465513-5465559)
chr5 (302-360)||(32421964-32422022)
chr5 (241-325)||(18637218-18637302)
chr5 (249-293)||(28973782-28973826)
chr5 (240-288)||(29922809-29922857)
[»] chr3 (18 HSPs)
chr3 (221-360)||(25129571-25129711)
chr3 (302-360)||(40339221-40339279)
chr3 (302-360)||(41115394-41115452)
chr3 (252-360)||(44489448-44489557)
chr3 (221-288)||(52925733-52925800)
chr3 (303-359)||(25359608-25359663)
chr3 (221-288)||(3845234-3845301)
chr3 (305-360)||(49829088-49829143)
chr3 (302-360)||(32111989-32112047)
chr3 (221-281)||(1290677-1290737)
chr3 (224-288)||(3776438-3776502)
chr3 (248-311)||(21513428-21513491)
chr3 (221-280)||(38022333-38022392)
chr3 (221-288)||(40339081-40339148)
chr3 (221-288)||(52141367-52141434)
chr3 (222-288)||(39256572-39256638)
chr3 (247-311)||(12674935-12674999)
chr3 (221-277)||(35264544-35264600)
[»] chr7 (11 HSPs)
chr7 (222-335)||(38123723-38123836)
chr7 (232-340)||(17111782-17111890)
chr7 (224-288)||(45004884-45004948)
chr7 (247-311)||(45369084-45369148)
chr7 (302-360)||(35105153-35105211)
chr7 (225-360)||(38453268-38453403)
chr7 (248-311)||(883377-883440)
chr7 (248-311)||(1242706-1242769)
chr7 (302-361)||(7168900-7168959)
chr7 (221-281)||(15050189-15050248)
chr7 (250-278)||(24953701-24953729)
[»] chr6 (14 HSPs)
chr6 (221-311)||(5724729-5724819)
chr6 (221-311)||(29240551-29240641)
chr6 (224-277)||(1485280-1485333)
chr6 (224-276)||(34910902-34910954)
chr6 (302-360)||(578925-578983)
chr6 (220-288)||(34620781-34620849)
chr6 (220-288)||(34748218-34748286)
chr6 (221-288)||(10400818-10400885)
chr6 (222-288)||(19601714-19601781)
chr6 (247-288)||(9922382-9922423)
chr6 (303-340)||(26280601-26280638)
chr6 (315-359)||(3524932-3524976)
chr6 (248-340)||(6896002-6896094)
chr6 (221-281)||(7262967-7263027)
[»] chr4 (16 HSPs)
chr4 (221-311)||(49138934-49139024)
chr4 (224-311)||(35064962-35065049)
chr4 (302-360)||(32817485-32817543)
chr4 (221-287)||(33843587-33843653)
chr4 (221-288)||(2635059-2635126)
chr4 (302-360)||(29779086-29779144)
chr4 (221-318)||(21691312-21691409)
chr4 (221-281)||(50358143-50358203)
chr4 (248-311)||(26617726-26617789)
chr4 (221-288)||(39438684-39438751)
chr4 (305-359)||(9064229-9064282)
chr4 (221-279)||(20712546-20712604)
chr4 (303-340)||(9134606-9134643)
chr4 (221-282)||(50061763-50061824)
chr4 (221-281)||(1099732-1099792)
chr4 (303-359)||(32818404-32818459)
[»] scaffold0168 (1 HSPs)
scaffold0168 (221-288)||(31722-31789)
[»] scaffold0314 (1 HSPs)
scaffold0314 (220-277)||(17321-17378)
[»] scaffold0361 (1 HSPs)
scaffold0361 (221-281)||(14242-14302)


Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 393
Target Start/End: Original strand, 41178552 - 41178914
Alignment:
Q  11 cacagactaatagttctcatgattcaccaaaacaaatgtaaaaaacaatgaaacaacctaaagagtaaattacttacatcaccccctctctaaacataaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41178552 cacagactaatagttctcatgattcaccaaaacaaatgtaaaaaacaatgaaacaacctaaagagtaaattacttacatcaccccctctctaaacataaa 41178651  T
Q  111 cagacgcagtcaaacgcaggagcatcaaaacttacaaaataactacaaattataatgcaagaattggattgccaaacgttaattttatttaatcagaatc 210  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41178652 cagacgcaatcaaacgcaggagcatcaaaacttacaaaataactacaaattataatgcaagaattggattgccaaacgttaattttatttaatcagaatc 41178751  T
Q  211 actatgcttaatgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattga 310  Q
    |||||||||||||||||||||||| |||||||||||||||||                    ||||||||||||||||||||||||| ||||||||||||    
T  41178752 actatgcttaatgtttggtttcacctctggaggggtcaaaat--------------------tgattttgagatgtttcgatgtttttaaatagaattga 41178831  T
Q  311 tcctacttgaagctagaatttgtagttttttgcttctataattgattttatttaaccttgaatacataaatatatccaaatag 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41178832 tcctacttgaagctagaatttgtagttttttgcttctataattgattttatttaaccttgaatacataactatatccaaatag 41178914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 335
Target Start/End: Original strand, 8381882 - 8381994
Alignment:
Q  223 gtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcctacttgaag 322  Q
    ||||||||  ||||||||||| ||||||||||||||| ||||| || |||||||||||| |||||| | |  |   ||  ||||||||| ||||||||||    
T  8381882 gtttggttcgacttctggaggagtcaaaattgattctagaggtataaaattgattttgacatgtttggttcctcaaaagcagaattgattctacttgaag 8381981  T
Q  323 ctagaatttgtag 335  Q
    |||||| ||||||    
T  8381982 ctagaaattgtag 8381994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 360
Target Start/End: Complemental strand, 30220297 - 30220242
Alignment:
Q  305 aattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 360  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||| |||||||||||    
T  30220297 aattgattctacttgaagctataatttgtagttctttgcttctacaattgatttta 30220242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 359
Target Start/End: Original strand, 11049204 - 11049301
Alignment:
Q  261 gaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttt 359  Q
    |||||||||||||||||  || |||||||  || |||| | |||||| ||| |||||||||||||| ||||||||  ||||| ||||| ||||||||||    
T  11049204 gaggtgtagaattgattcagacatgtttcattgctttcgagtagaatcgattctacttgaagctaggatttgtag-cttttgattctaaaattgatttt 11049301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 311
Target Start/End: Original strand, 41516883 - 41516973
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgat 311  Q
    |||||||||| ||||| |||||| ||||||||  ||||| ||||||||||||||||| ||| || ||   |||||||| | ||||||||||    
T  41516883 atgtttggttccacttttggaggagtcaaaatccattctagaggtgtagaattgattatgacatcttggaatgttttcgagtagaattgat 41516973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 8130854 - 8130911
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattt 278  Q
    |||||||||| |||||||||||| | |||||||||||||  | |||||||||||||||    
T  8130854 atgtttggttccacttctggaggagccaaaattgattctaaaagtgtagaattgattt 8130911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 15084782 - 15084726
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgatt 277  Q
    ||||||||||  |||||| |||||||||| |||||||||  ||||||||||||||||    
T  15084782 atgtttggttctacttctagaggggtcaatattgattctgaaggtgtagaattgatt 15084726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 15478190 - 15478123
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    |||||||||| ||||| |||||| | |||| |||||| | | ||||||||||||||||||| ||||||    
T  15478190 atgtttggttccacttttggaggagccaaacttgattttagcggtgtagaattgattttgacatgttt 15478123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 45660937 - 45660871
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    |||||| ||| |||||||||||||| ||||||||||| | |||||| |||||||||| ||| ||||||    
T  45660937 atgtttcgttccacttctggaggggccaaaattgatt-tggaggtgaagaattgattctgacatgttt 45660871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 360
Target Start/End: Complemental strand, 3887538 - 3887480
Alignment:
Q  303 agaattgatcctacttgaa-gctagaatttgtagttttttgcttctataattgatttta 360  Q
    ||||||||| |||||| || |||||||||||||| |||| ||||||| |||||||||||    
T  3887538 agaattgattctacttaaaagctagaatttgtagcttttggcttctacaattgatttta 3887480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 360
Target Start/End: Complemental strand, 15515160 - 15515102
Alignment:
Q  302 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 360  Q
    |||||||||| |||| |||||||||||||||||| |||| ||||||  |||| ||||||    
T  15515160 tagaattgattctacatgaagctagaatttgtaggttttggcttctgcaattaatttta 15515102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 20721104 - 20721046
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgatttt 279  Q
    |||||| ||| ||||| ||||||  |||||||||||||| ||||||||||||| |||||    
T  20721104 atgttttgttccacttttggaggaatcaaaattgattctagaggtgtagaattcatttt 20721046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 28083975 - 28083922
Alignment:
Q  305 aattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttt 359  Q
    ||||||| |||||||||||||||||||||||  ||||| |||||||||| |||||    
T  28083975 aattgattctacttgaagctagaatttgtag-cttttgattctataattaatttt 28083922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 311
Target Start/End: Complemental strand, 47322095 - 47322005
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgat 311  Q
    |||||||||||||||| | ||| | | | |||| ||| | ||||||||||||||||||||| |||||| | |||| || | ||||||||||    
T  47322095 atgtttggtttcacttttagagagattataatttattgtggaggtgtagaattgattttgacatgttttgttgttgtcgagtagaattgat 47322005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 311
Target Start/End: Original strand, 35681826 - 35681913
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgat 311  Q
    |||||||||||||||| | ||||||||||| |||||| | || |||||  ||||||| ||| ||||||    ||||||||| |||||||||    
T  35681826 atgtttggtttcacttttagaggggtcaaagttgattttagatgtgtaacattgattctgacatgttt---ggttttcaaacagaattgat 35681913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 223 - 360
Target Start/End: Original strand, 43717240 - 43717377
Alignment:
Q  223 gtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcctacttgaag 322  Q
    |||||||||||||| |||||| || |||||||||||| || |||||||||||||||||| |||||| ||| ||    | |||||||||| ||||||||||    
T  43717240 gtttggtttcacttttggaggtgttaaaattgattctagatgtgtagaattgattttgacatgtttggatattgattagtagaattgattctacttgaag 43717339  T
Q  323 ctagaatttgtagttttttgcttctataattgatttta 360  Q
    ||||||||||||| || |||||| || |||||||||||    
T  43717340 ctagaatttgtagcttcttgcttttacaattgatttta 43717377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 355
Target Start/End: Complemental strand, 21234666 - 21234562
Alignment:
Q  251 attgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcctacttgaagctagaatttgtagttttttgcttctata 350  Q
    ||||||| | |||| |||||||||||||||  | |||| || ||| | || |||||||||| ||||||||||||||||||||||| |||| ||||||| |    
T  21234666 attgattttagaggagtagaattgattttggcaggtttggacgttgtaaagtagaattgattctacttgaagctagaatttgtagcttttggcttctaca 21234567  T
Q  351 attga 355  Q
    |||||    
T  21234566 attga 21234562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 37649659 - 37649596
Alignment:
Q  225 ttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    |||||| ||||| |||||| ||||||||||||||||||||| | ||||||||||||| ||||||    
T  37649659 ttggttccacttttggaggagtcaaaattgattcttgaggtatggaattgattttgacatgttt 37649596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 250 - 340
Target Start/End: Original strand, 43501068 - 43501158
Alignment:
Q  250 aattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcctacttgaagctagaatttgtagttttt 340  Q
    ||||||| || ||| ||||||||||||| ||| |||||| | || |||||| |||||||||| ||||||||| |||| |||||||| ||||    
T  43501068 aattgatcctggagctgtagaattgattctgacatgtttggttgctttcaagtagaattgattctacttgaaactaggatttgtagctttt 43501158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 7629758 - 7629817
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttg 280  Q
    |||||||||| ||||| |||||| | ||| ||||||||| ||||||||||||||||||||    
T  7629758 atgtttggttccacttttggaggagccaagattgattctagaggtgtagaattgattttg 7629817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 33047741 - 33047685
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgatt 277  Q
    |||||||||||| ||||| |||||  ||||||||||| | |||||||||||||||||    
T  33047741 atgtttggtttcgcttctagagggaccaaaattgattttggaggtgtagaattgatt 33047685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 14110582 - 14110641
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttg 280  Q
    |||||| ||||||||| |||||  |||||||||||||   ||||||||||||||||||||    
T  14110582 atgtttcgtttcacttttggagaagtcaaaattgatttcagaggtgtagaattgattttg 14110641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 15928595 - 15928556
Alignment:
Q  249 aaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  15928595 aaattgattctggaggtgtagaattgattttgacatgttt 15928556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 36374212 - 36374279
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    |||||||| ||||||| || || |||||||||||||| |  ||||||| |||||||||||| ||||||    
T  36374212 atgtttgggttcacttttgaagcggtcaaaattgattttaaaggtgtataattgattttgacatgttt 36374279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 37420358 - 37420319
Alignment:
Q  249 aaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  37420358 aaattgattctagaggtgtagaattgattttgacatgttt 37420319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 40582650 - 40582712
Alignment:
Q  226 tggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    ||||| ||||| |||| | | ||||||||||||| ||||||||||||||||||| | ||||||    
T  40582650 tggttccacttttggaagagccaaaattgattctagaggtgtagaattgattttaacatgttt 40582712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 335
Target Start/End: Original strand, 9943345 - 9943434
Alignment:
Q  247 caaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatccta-cttgaagctagaatttgtag 335  Q
    |||||||||||||  ||||||| |||||||||| | |||||| | || | |||  |||||||||| ||| ||||||||||| ||||||||    
T  9943345 caaaattgattctgaaggtgtaaaattgattttaacatgtttggttgctctcacttagaattgattctagcttgaagctaggatttgtag 9943434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 16013888 - 16013831
Alignment:
Q  233 acttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcg 290  Q
    |||| |||||| | ||||||| ||||| ||||||||||||||||||| | ||||||||    
T  16013888 acttttggaggagccaaaatttattctagaggtgtagaattgattttaacatgtttcg 16013831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 43969699 - 43969740
Alignment:
Q  307 ttgatcctacttgaagctagaatttgtagttttttgcttcta 348  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||    
T  43969699 ttgattctacttgaaactagaatttgtagctttttgcttcta 43969740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 16519368 - 16519400
Alignment:
Q  247 caaaattgattcttgaggtgtagaattgatttt 279  Q
    ||||||||||||| |||||||||||||||||||    
T  16519368 caaaattgattctagaggtgtagaattgatttt 16519400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 30503109 - 30503161
Alignment:
Q  225 ttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgatt 277  Q
    |||||| |||||||  ||||||||||||||||| | || ||||||||||||||    
T  30503109 ttggttccacttctaaaggggtcaaaattgattttggaagtgtagaattgatt 30503161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 42774998 - 42774958
Alignment:
Q  247 caaaattgattcttgaggtgtagaattgattttgagatgtt 287  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  42774998 caaaattgattctagaggtatagaattgattttgacatgtt 42774958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 340
Target Start/End: Complemental strand, 15677987 - 15677868
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcctacttga 320  Q
    |||||||||| |||||||  |||||| |||||||||| | ||| |||| |||||||| ||| |||||| | || ||||||||||||||||| ||||||||    
T  15677987 atgtttggttccacttctacaggggttaaaattgattgtggagttgtacaattgattctgacatgtttggttgctttcaaatagaattgattctacttga 15677888  T
Q  321 agctagaatttgtagttttt 340  Q
    |||||| |||| ||| ||||    
T  15677887 agctaggatttatagctttt 15677868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 221 - 325
Target Start/End: Complemental strand, 32994413 - 32994309
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcctacttga 320  Q
    |||||||||| ||||||| ||| |||   |||||||||| || |||||||||||||| ||| |||||| | || ||||   |||||||||| ||||||||    
T  32994413 atgtttggttccacttctagagaggttgtaattgattctggatgtgtagaattgattatgatatgtttggttgctttcgtgtagaattgattctacttga 32994314  T
Q  321 agcta 325  Q
    |||||    
T  32994313 agcta 32994309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 39648334 - 39648267
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    |||||||||| ||||| | |||| ||||||||||||||| ||| |||| |||||||||||| ||||||    
T  39648334 atgtttggttacacttttagaggagtcaaaattgattctagagatgtataattgattttgacatgttt 39648267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 311
Target Start/End: Original strand, 41614740 - 41614830
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgat 311  Q
    |||||||||| || || || ||| | ||||||||||||| ||||| || ||||||||||||  ||||| |||| |||||| ||||||||||    
T  41614740 atgtttggttccatttgtgtaggagccaaaattgattctagaggtataaaattgattttgacttgtttggatggtttcaagtagaattgat 41614830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 347
Target Start/End: Original strand, 75626 - 75745
Alignment:
Q  228 gtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcctacttgaagctaga 327  Q
    |||||| || |||| ||| ||||||||||||| || | ||| |||||||||||| | |||| ||||||||  | ||||||||||  |||  ||||||| |    
T  75626 gtttcaattttggaagggccaaaattgattctagaagagtataattgattttgatacgttttgatgttttacagtagaattgattatacacgaagctaaa 75725  T
Q  328 atttgtagttttttgcttct 347  Q
     ||||||| |||| ||||||    
T  75726 gtttgtagcttttggcttct 75745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 272
Target Start/End: Original strand, 7533697 - 7533748
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaat 272  Q
    |||||||||| ||||| |||||||| ||||||| ||||| ||||||||||||    
T  7533697 atgtttggttccacttttggaggggccaaaattaattctggaggtgtagaat 7533748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 24776282 - 24776215
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    |||||||||| ||||| |||| | | | ||||||||||| | ||||||||||||||||||| ||||||    
T  24776282 atgtttggttccacttttggaagaggcgaaattgattctcggggtgtagaattgattttgatatgttt 24776215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 8252721 - 8252782
Alignment:
Q  249 aaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgat 311  Q
    ||||||||||| ||||||||||| ||||||||| |||||| | |||||| || ||||||||||    
T  8252721 aaattgattctagaggtgtagaactgattttgacatgtttggctgtttt-aagtagaattgat 8252782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 359
Target Start/End: Complemental strand, 18355975 - 18355882
Alignment:
Q  265 tgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttt 359  Q
    ||||||||||||||||| |||| |   ||||||| | |||||||||| ||  |||||||||| |||||| || ||||| ||||| ||||||||||    
T  18355975 tgtagaattgattttgacatgtatgattgttttcgagtagaattgattctgattgaagctaggatttgt-gtcttttgattctaaaattgatttt 18355882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 24183748 - 24183801
Alignment:
Q  307 ttgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 360  Q
    ||||| ||||||||||||| ||||| |||||||| || | ||||||||||||||    
T  24183748 ttgattctacttgaagctataatttatagtttttggcatatataattgatttta 24183801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 44141246 - 44141185
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgag 282  Q
    |||||||||| ||||||| ||||   ||||||||||||| ||||| ||||||||||| ||||    
T  44141246 atgtttggttccacttctagaggaaccaaaattgattctggaggtctagaattgattctgag 44141185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 4554402 - 4554462
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttga 281  Q
    ||||||||| |||||| |||||| | | ||||||||||| || |||||||||| |||||||    
T  4554402 atgtttggtatcacttttggaggagcccaaattgattctagaagtgtagaattcattttga 4554462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 11038104 - 11038152
Alignment:
Q  247 caaaattgattcttgaggtgtagaattgattttgagatgtttcgatgtt 295  Q
    ||||||||||||| ||||| || |||||||||||| |||||| ||||||    
T  11038104 caaaattgattctagaggtatataattgattttgacatgtttggatgtt 11038152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 332
Target Start/End: Complemental strand, 7328784 - 7328699
Alignment:
Q  248 aaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcct-acttgaagctagaatttg 332  Q
    |||||||||| |||||||||| |||||||||| | |||| | |||||||||||||||||||||| || ||||||||||||||||||    
T  7328784 aaaattgatttttgaggtgtataattgatttttacatgtctggatgttttcaaatagaattgattctaacttgaagctagaatttg 7328699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 334
Target Start/End: Original strand, 39097160 - 39097273
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcctacttga 320  Q
    |||||||||||||||| | ||| |  | ||||||||| | ||||||||||||||||||||| |||||| | || |||||  |||||||||| ||||||||    
T  39097160 atgtttggtttcacttttagagagaccgaaattgattatagaggtgtagaattgattttgacatgtttggttggtttcaggtagaattgattctacttga 39097259  T
Q  321 agctagaatttgta 334  Q
    ||||| ||||||||    
T  39097260 agctaaaatttgta 39097273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 221 - 339
Target Start/End: Complemental strand, 3043193 - 3043074
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcct-acttg 319  Q
    |||| ||||| ||||| ||||||  |||||||||||||| ||||||||||||||||||||| |||||| | || ||   |||||||||||| || || ||    
T  3043193 atgtctggttccacttatggaggaatcaaaattgattctagaggtgtagaattgattttgacatgtttagttgcttaagaatagaattgattctaacatg 3043094  T
Q  320 aagctagaatttgtagtttt 339  Q
    ||||||||| ||| ||||||    
T  3043093 aagctagaaattggagtttt 3043074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 311
Target Start/End: Complemental strand, 11911998 - 11911908
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgat 311  Q
    ||||||||||| | || ||| |||||||||||||||||| ||| |||| ||||||||||||  ||||| | ||| || || ||||||||||    
T  11911998 atgtttggttttaattttggtggggtcaaaattgattctagagatgtaaaattgattttgacttgtttagttgtgttaaagtagaattgat 11911908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 15368139 - 15368204
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgt 286  Q
    |||||||||| ||||| |||||| | ||||||||||||| ||  ||||||||||||||||| ||||    
T  15368139 atgtttggttccacttttggaggagccaaaattgattctagatatgtagaattgattttgacatgt 15368204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 1102077 - 1102181
Alignment:
Q  251 attgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatccta-cttgaagctagaatttgtagttttttgcttctat 349  Q
    ||||||||| |||| ||| ||||||||||||  ||||| | |||| | || ||||||||||  || ||||||||||| |||||||| ||||  |||||||    
T  1102077 attgattctagaggggtataattgattttgacgtgtttaggtgttctgaagtagaattgattttaacttgaagctaggatttgtagcttttgacttctat 1102176  T
Q  350 aattg 354  Q
    |||||    
T  1102177 aattg 1102181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 332
Target Start/End: Complemental strand, 10860010 - 10859898
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcct-acttg 319  Q
    |||||||||| ||||| |||| | | ||||||| ||| | ||||||||||| |||||||||  |||||  ||||| ||   |||||||||| || |||||    
T  10860010 atgtttggttccacttttggaagaggcaaaattcattatagaggtgtagaaatgattttgacctgtttgaatgttctcgggtagaattgattctaacttg 10859911  T
Q  320 aagctagaatttg 332  Q
    |||||||||||||    
T  10859910 aagctagaatttg 10859898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 38845700 - 38845644
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgatt 277  Q
    |||||||||| ||||||| ||| |  ||||||||||||| |||||||||||||||||    
T  38845700 atgtttggttccacttctagagagaccaaaattgattctggaggtgtagaattgatt 38845644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 5465559 - 5465513
Alignment:
Q  302 tagaattgatcctacttgaagctagaatttgtagttttttgcttcta 348  Q
    ||||||| || ||||||||||||| |||||||||||||| |||||||    
T  5465559 tagaattaattctacttgaagctacaatttgtagtttttggcttcta 5465513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 360
Target Start/End: Complemental strand, 32422022 - 32421964
Alignment:
Q  302 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 360  Q
    |||||||||| || |||||||||| |||||||||  ||| ||||||| |||||||||||    
T  32422022 tagaattgattctccttgaagctacaatttgtagcatttggcttctacaattgatttta 32421964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 18637218 - 18637302
Alignment:
Q  241 aggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcctacttgaagcta 325  Q
    |||||||||||||||||||  ||||| | ||||||||   | |||||| | || |||||| |||||||||| | |||||||||||    
T  18637218 aggggtcaaaattgattctaaaggtgaacaattgattcctacatgtttggttgctttcaagtagaattgattccacttgaagcta 18637302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 28973782 - 28973826
Alignment:
Q  249 aaattgattcttgaggtgtagaattgattttgagatgtttcgatg 293  Q
    ||||||||||| || |||||||||||||||||| |||||| ||||    
T  28973782 aaattgattctagatgtgtagaattgattttgatatgtttggatg 28973826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 29922809 - 29922857
Alignment:
Q  240 gaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    |||| ||||||||||||||| |  |||||||||||||||||| ||||||    
T  29922809 gaggagtcaaaattgattctagtagtgtagaattgattttgacatgttt 29922857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 221 - 360
Target Start/End: Complemental strand, 25129711 - 25129571
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgagg-tgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcctacttg 319  Q
    ||||||||||||| || | |||||||||||||||||||| |||| |||||||||||||||   |||||| |||| ||| ||   |||||||| ||||||     
T  25129711 atgtttggtttcaattttcgaggggtcaaaattgattctagaggttgtagaattgattttatcatgtttggatgatttaaaggtgaattgattctactta 25129612  T
Q  320 aagctagaatttgtagttttttgcttctataattgatttta 360  Q
    ||  || | |||||| ||||| |||||||||||||||||||    
T  25129611 aacatatagtttgtaatttttggcttctataattgatttta 25129571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 40339221 - 40339279
Alignment:
Q  302 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 360  Q
    |||||||||| ||||||||||||| ||||||||| |||||||||||| |||||||||||    
T  40339221 tagaattgattctacttgaagctacaatttgtagctttttgcttctacaattgatttta 40339279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 360
Target Start/End: Complemental strand, 41115452 - 41115394
Alignment:
Q  302 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 360  Q
    |||||||||| ||||||||||||||||||||||| |||| ||||||| |||||||||||    
T  41115452 tagaattgattctacttgaagctagaatttgtagcttttggcttctacaattgatttta 41115394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 360
Target Start/End: Complemental strand, 44489557 - 44489448
Alignment:
Q  252 ttgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcctacttgaagctagaa-tttgtagttttttgcttctata 350  Q
    |||||||| |||| ||| |||||||||||  |||||| |||||||| |||||||| | || ||||||||||| |||| ||||||| |||| | ||||| |    
T  44489557 ttgattctagaggagtaaaattgattttggcatgtttggatgttttgaaatagaactaattctacttgaagcaagaattttgtagcttttggtttctaca 44489458  T
Q  351 attgatttta 360  Q
    ||||||||||    
T  44489457 attgatttta 44489448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 52925800 - 52925733
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    ||||| |||| ||||| |||||| ||||||||||||||| |||||||| |||||||||||| ||||||    
T  52925800 atgttcggttccacttttggaggagtcaaaattgattctagaggtgtataattgattttgacatgttt 52925733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 303 - 359
Target Start/End: Complemental strand, 25359663 - 25359608
Alignment:
Q  303 agaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttt 359  Q
    ||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||    
T  25359663 agaattgattctacttgaagttagaatttgtagtttttt-attctataattgatttt 25359608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 3845301 - 3845234
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    |||||||||| ||||| |||||    ||||||||||||| ||||||||||||||||||||| ||||||    
T  3845301 atgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgattttgacatgttt 3845234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 360
Target Start/End: Complemental strand, 49829143 - 49829088
Alignment:
Q  305 aattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 360  Q
    ||||||| ||||||||||||| ||||||||||| || ||||||| |||||||||||    
T  49829143 aattgattctacttgaagctacaatttgtagttcttagcttctacaattgatttta 49829088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 32111989 - 32112047
Alignment:
Q  302 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 360  Q
    |||||||||| ||||||||||||| ||||||||| |||| |||| || |||||||||||    
T  32111989 tagaattgattctacttgaagctacaatttgtagcttttggcttttagaattgatttta 32112047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 1290677 - 1290737
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttga 281  Q
    |||||||||| ||||||| ||||    |||||||||||| |||||||||||||||||||||    
T  1290677 atgtttggttccacttctagaggaactaaaattgattctagaggtgtagaattgattttga 1290737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 3776438 - 3776502
Alignment:
Q  224 tttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    ||||||| ||||| |||||| | |||||||| || | ||||||||||||||||||||| ||||||    
T  3776438 tttggttccacttttggaggagacaaaattggttatagaggtgtagaattgattttgacatgttt 3776502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 21513491 - 21513428
Alignment:
Q  248 aaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgat 311  Q
    |||||||||||| |||||| |||||||||||| | ||| || |||||| |||| ||||||||||    
T  21513491 aaaattgattctagaggtggagaattgattttaacatgcttggatgttctcaagtagaattgat 21513428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 38022333 - 38022392
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttg 280  Q
    |||||||||||||||||| || ||  |||| |||||||| || |||||||||||||||||    
T  38022333 atgtttggtttcacttctagaaggaccaaagttgattctagaagtgtagaattgattttg 38022392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 40339081 - 40339148
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    ||||||||||| |||| |||| ||| ||||||||||| | |||| ||| |||||||||||| ||||||    
T  40339081 atgtttggtttaacttttggaagggccaaaattgattttagaggagtataattgattttgacatgttt 40339148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 52141434 - 52141367
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    |||||||||| ||||||| |||||  || |||||||| |||||||||||||| |||| ||| ||||||    
T  52141434 atgtttggttccacttctagagggaccataattgatttttgaggtgtagaatagattctgatatgttt 52141367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 39256572 - 39256638
Alignment:
Q  222 tgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    ||||||||| ||||| |||||   ||||||||  |||| ||||||||||||||||||||| ||||||    
T  39256572 tgtttggttccacttttggagaaatcaaaattagttctagaggtgtagaattgattttgacatgttt 39256638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 12674935 - 12674999
Alignment:
Q  247 caaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgat 311  Q
    ||||||||||||| ||||||||||||||||  | | |||||| | ||||||||| |||| |||||    
T  12674935 caaaattgattctggaggtgtagaattgatcctaacatgtttggttgttttcaagtagagttgat 12674999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 35264600 - 35264544
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgatt 277  Q
    ||||||||||||| |||| ||| |||||||||| ||||| |||| ||| ||||||||    
T  35264600 atgtttggtttcatttctagagtggtcaaaatttattctagaggagtaaaattgatt 35264544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 335
Target Start/End: Complemental strand, 38123836 - 38123723
Alignment:
Q  222 tgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcctacttgaa 321  Q
    ||||||||| ||||| |||||| | ||||||||||||| ||| ||||||||||||||| | |||||| | |  | | || |||||||||| |||||||||    
T  38123836 tgtttggttccacttttggaggagccaaaattgattctagagatgtagaattgattttaacatgtttggttcctataaagtagaattgattctacttgaa 38123737  T
Q  322 gctagaatttgtag 335  Q
    ||||||| ||||||    
T  38123736 gctagaaattgtag 38123723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 340
Target Start/End: Original strand, 17111782 - 17111890
Alignment:
Q  232 cacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcctacttgaagctagaattt 331  Q
    ||||||| |||||||||||||| ||||| ||| ||| ||||||||| ||| |||||| | || |||| | |||||||||| |||||||||||||  ||||    
T  17111782 cacttctagaggggtcaaaattaattctagagatgtcgaattgattctgacatgtttggttgctttcgagtagaattgattctacttgaagctatgattt 17111881  T
Q  332 gtagttttt 340  Q
    |||| ||||    
T  17111882 gtagctttt 17111890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 45004884 - 45004948
Alignment:
Q  224 tttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    |||||||||||||||  | ||| ||||||||||||| ||||||||||||||||||||| ||||||    
T  45004884 tttggtttcacttctaaaagggccaaaattgattctagaggtgtagaattgattttgacatgttt 45004948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 45369084 - 45369148
Alignment:
Q  247 caaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgat 311  Q
    |||||||||||   |||||||||| ||||||||||||||||| |||||| |||| ||||||||||    
T  45369084 caaaattgatttcagaggtgtagatttgattttgagatgtttggatgttctcaagtagaattgat 45369148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 35105153 - 35105211
Alignment:
Q  302 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 360  Q
    |||||||||| ||||||||||||| |||||||||||||| | ||||| |||||| ||||    
T  35105153 tagaattgattctacttgaagctataatttgtagtttttggtttctacaattgacttta 35105211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 360
Target Start/End: Original strand, 38453268 - 38453403
Alignment:
Q  225 ttggtttcacttctggaggggtcaaaattgattcttgaggt-gtagaattgattttgagatgtttcgatgttttcaaatagaattgatcctacttgaagc 323  Q
    ||||||||| |||| ||||  |||||| | ||||| ||||| ||||||||||||||  ||| ||| |||| ||| || |||||||||| |||||||||||    
T  38453268 ttggtttcaattctagagga-tcaaaagtaattctagaggttgtagaattgattttatgatatttggatgatttaaagtagaattgattctacttgaagc 38453366  T
Q  324 tagaatttgtagttttttgcttctataattgatttta 360  Q
    |   |||||||  ||||  |||||| |||||||||||    
T  38453367 tgctatttgtaacttttgacttctacaattgatttta 38453403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 883377 - 883440
Alignment:
Q  248 aaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgat 311  Q
    |||||||||||| |||||||||| |||||||||| || |||  ||||| || ||||||||||||    
T  883377 aaaattgattctagaggtgtagagttgattttgacatatttgcatgttctccaatagaattgat 883440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 1242706 - 1242769
Alignment:
Q  248 aaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgat 311  Q
    |||||||||||| |||||||||| |||||||||| || |||  ||||| || ||||||||||||    
T  1242706 aaaattgattctagaggtgtagagttgattttgacatatttgcatgttctccaatagaattgat 1242769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 361
Target Start/End: Original strand, 7168900 - 7168959
Alignment:
Q  302 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgattttat 361  Q
    |||||||||| || | | |||||||||||||||| ||||| ||||||| |||||||||||    
T  7168900 tagaattgattctgcctaaagctagaatttgtagctttttacttctatgattgattttat 7168959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 15050189 - 15050248
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttga 281  Q
    |||||||||| ||||| |||||| | ||||||||||||| || ||| ||||||||||||||    
T  15050189 atgtttggttccactt-tggaggagccaaaattgattctagaagtgaagaattgattttga 15050248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 278
Target Start/End: Original strand, 24953701 - 24953729
Alignment:
Q  250 aattgattcttgaggtgtagaattgattt 278  Q
    |||||||||||||||||||||||||||||    
T  24953701 aattgattcttgaggtgtagaattgattt 24953729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 311
Target Start/End: Complemental strand, 5724819 - 5724729
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgat 311  Q
    |||||||||| ||||||| |||||| ||||||| ||||| || |||||||||||||| ||| |||||| |||| |||||  ||||||||||    
T  5724819 atgtttggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctgacatgtttggatgctttcaggtagaattgat 5724729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 311
Target Start/End: Complemental strand, 29240641 - 29240551
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgat 311  Q
    |||||||||| ||||| ||| ||  |||||||||||||| |||||||| |||||||||||| |||||  ||| ||||||| ||||||||||    
T  29240641 atgtttggttccacttttgggggaatcaaaattgattctagaggtgtaaaattgattttgacatgttaggatattttcaagtagaattgat 29240551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 277
Target Start/End: Complemental strand, 1485333 - 1485280
Alignment:
Q  224 tttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgatt 277  Q
    ||||||||||||||| |||||||||| || |||||| |||||||||||||||||    
T  1485333 tttggtttcacttctagaggggtcaatatggattctagaggtgtagaattgatt 1485280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 34910902 - 34910954
Alignment:
Q  224 tttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgat 276  Q
    ||||||||||||||| |||||| |||||| |||||| ||||||||||||||||    
T  34910902 tttggtttcacttctagaggggccaaaatcgattctagaggtgtagaattgat 34910954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 578925 - 578983
Alignment:
Q  302 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 360  Q
    |||||||||| ||||||||||||||||||| ||||||||  |||| ||| |||||||||    
T  578925 tagaattgatactacttgaagctagaatttttagtttttgacttccatagttgatttta 578983  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 34620781 - 34620849
Alignment:
Q  220 aatgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    ||||||| ||| ||||| ||||||   |||||||||||||  |||||||||||||||||||| ||||||    
T  34620781 aatgtttcgttccacttttggaggacccaaaattgattctaaaggtgtagaattgattttgacatgttt 34620849  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 34748218 - 34748286
Alignment:
Q  220 aatgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    ||||||| ||| ||||| ||||||   |||||||||||||  |||||||||||||||||||| ||||||    
T  34748218 aatgtttcgttccacttttggaggacccaaaattgattctaaaggtgtagaattgattttgacatgttt 34748286  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 10400885 - 10400818
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    |||||||||| ||||  ||||||   ||||||||||||| |||||||| |||||||||||| ||||||    
T  10400885 atgtttggttccactcttggaggatgcaaaattgattctagaggtgtataattgattttgatatgttt 10400818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 19601714 - 19601781
Alignment:
Q  222 tgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattg-attttgagatgttt 288  Q
    ||||||||| ||||| |||||| ||||||||||||||  ||| ||||||||||  |||||||||||||    
T  19601714 tgtttggttccacttttggaggagtcaaaattgattccagagatgtagaattgttttttgagatgttt 19601781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 9922382 - 9922423
Alignment:
Q  247 caaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    |||||||||||||||| ||||| |||||||||||| ||||||    
T  9922382 caaaattgattcttgatgtgtataattgattttgatatgttt 9922423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 340
Target Start/End: Original strand, 26280601 - 26280638
Alignment:
Q  303 agaattgatcctacttgaagctagaatttgtagttttt 340  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  26280601 agaattgattccacttgaagctagaatttgtagttttt 26280638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 3524932 - 3524976
Alignment:
Q  315 acttgaagctagaatttgtagttttttgcttctataattgatttt 359  Q
    |||| ||||||||||||||||||||| ||||||| ||| ||||||    
T  3524932 actttaagctagaatttgtagtttttggcttctagaatcgatttt 3524976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 340
Target Start/End: Complemental strand, 6896094 - 6896002
Alignment:
Q  248 aaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcctacttgaagctagaatttgtagttttt 340  Q
    |||| ||||||| ||| ||||||||||||| ||| |||||| | |||| || | || ||||||| |||| ||||| ||| |||||||| ||||    
T  6896094 aaaaatgattctggagatgtagaattgattatgacatgtttggttgttgtcgagtacaattgattctacctgaagttaggatttgtagctttt 6896002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 7262967 - 7263027
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttga 281  Q
    |||||||||| ||||| | || | | ||||||||||||| || ||||||||||||||||||    
T  7262967 atgtttggttccacttttagatgaggcaaaattgattctagaagtgtagaattgattttga 7263027  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 311
Target Start/End: Complemental strand, 49139024 - 49138934
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgat 311  Q
    |||||||||| |||||||  || || ||||||||||||| ||||||||||||||||| ||| |||||| | ||||||||| || |||||||    
T  49139024 atgtttggttccacttctaaagtggccaaaattgattctagaggtgtagaattgattctgacatgtttggttgttttcaagtaaaattgat 49138934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 35064962 - 35065049
Alignment:
Q  224 tttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgat 311  Q
    ||||||| ||||||| |||||||||||||||||| | ||||||||||||||||| ||| || ||| | || |||| | ||||||||||    
T  35064962 tttggttccacttctcgaggggtcaaaattgattatggaggtgtagaattgattatgacatttttggttgctttcgagtagaattgat 35065049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 360
Target Start/End: Complemental strand, 32817543 - 32817485
Alignment:
Q  302 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 360  Q
    |||||||||| |||||||| |||||||||||||| ||||| |||||| |||||||||||    
T  32817543 tagaattgattctacttgaggctagaatttgtagctttttacttctacaattgatttta 32817485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 33843587 - 33843653
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtt 287  Q
    |||||||||||||||||| |||||  ||||||||||||| ||||||||||||| ||| ||| |||||    
T  33843587 atgtttggtttcacttctagagggtccaaaattgattctagaggtgtagaattaattctgaaatgtt 33843653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 2635059 - 2635126
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    |||||||||||||||| | |||||  ||||||||||||| || ||||| |||||||||||| ||||||    
T  2635059 atgtttggtttcacttttagagggaccaaaattgattctagaagtgtaaaattgattttgacatgttt 2635126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 360
Target Start/End: Complemental strand, 29779144 - 29779086
Alignment:
Q  302 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 360  Q
    |||||||||| ||||||||||||||||||||||| ||||  |||||  |||||||||||    
T  29779144 tagaattgattctacttgaagctagaatttgtagcttttcacttctgcaattgatttta 29779086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 318
Target Start/End: Complemental strand, 21691409 - 21691312
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgatcctactt 318  Q
    |||||||||| ||||||| |||||  || |||||||||| ||||||||||||||||| ||| || ||| | |||| || | ||| |||||| ||||||    
T  21691409 atgtttggttccacttctagagggaccagaattgattctggaggtgtagaattgattctgacatatttggttgttgtcgagtagtattgattctactt 21691312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 50358203 - 50358143
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttga 281  Q
    ||||| |||| ||||||||| || |  |||||||||||| |||||||||||||||||||||    
T  50358203 atgttcggttccacttctggtggagaaaaaattgattctagaggtgtagaattgattttga 50358143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 26617789 - 26617726
Alignment:
Q  248 aaaattgattcttgaggtgtagaattgattttgagatgtttcgatgttttcaaatagaattgat 311  Q
    |||||||||||| || ||||| |||||||||||| |||||| |||| |||  ||||||||||||    
T  26617789 aaaattgattctagatgtgtaaaattgattttgacatgtttggatgcttttcaatagaattgat 26617726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 39438684 - 39438751
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    |||||||||| ||| | |||||  ||||||||||||| | |||||||| |||||||||||| ||||||    
T  39438684 atgtttggttccacgtttggagtagtcaaaattgattttggaggtgtaaaattgattttgacatgttt 39438751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 9064229 - 9064282
Alignment:
Q  305 aattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttt 359  Q
    ||||||| ||||||||| ||||||||||||| |||||| ||||| ||||||||||    
T  9064229 aattgattctacttgaaactagaatttgtag-tttttgattctagaattgatttt 9064282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 20712546 - 20712604
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgatttt 279  Q
    |||||||||| ||||| |||| | | ||||||||||||| ||||| |||||||||||||    
T  20712546 atgtttggttccacttatggaagaggcaaaattgattctagaggtttagaattgatttt 20712604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 340
Target Start/End: Original strand, 9134606 - 9134643
Alignment:
Q  303 agaattgatcctacttgaagctagaatttgtagttttt 340  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  9134606 agaattgatcctacttgaagctaaaatttgtagctttt 9134643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 50061824 - 50061763
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgag 282  Q
    |||||||||| ||||||| ||||   ||||||||||||| ||||| ||||||||||| ||||    
T  50061824 atgtttggttccacttctagaggaaccaaaattgattctggaggtctagaattgattctgag 50061763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 1099732 - 1099792
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttga 281  Q
    |||||||||  ||||| |||||| | ||||||||||||| ||| || ||||||||||||||    
T  1099732 atgtttggtaccacttttggaggagacaaaattgattctagagatgcagaattgattttga 1099792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 359
Target Start/End: Complemental strand, 32818459 - 32818404
Alignment:
Q  303 agaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttt 359  Q
    ||||||||| ||| |||||||||||||||||||  ||||| ||||| ||||||||||    
T  32818459 agaattgattctatttgaagctagaatttgtag-cttttgattctagaattgatttt 32818404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 31722 - 31789
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttgagatgttt 288  Q
    |||||||||| ||||||| ||| |  ||||||||||||| ||||||||||||||||| ||| ||||||    
T  31722 atgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaattgattctgacatgttt 31789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 17321 - 17378
Alignment:
Q  220 aatgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgatt 277  Q
    ||||||||||| ||||||| |||    ||||||||||||| |||||||||||||||||    
T  17321 aatgtttggttccacttctagagtaaccaaaattgattctggaggtgtagaattgatt 17378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 14302 - 14242
Alignment:
Q  221 atgtttggtttcacttctggaggggtcaaaattgattcttgaggtgtagaattgattttga 281  Q
    |||||||||| ||||| |||| | | ||||||||| ||| || ||||||||||||||||||    
T  14302 atgtttggttccacttttggaagagccaaaattgaatctagatgtgtagaattgattttga 14242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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