View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10271_low_28 (Length: 406)

Name: NF10271_low_28
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10271_low_28
NF10271_low_28
[»] chr6 (17 HSPs)
chr6 (214-389)||(7228247-7228426)
chr6 (1-116)||(1605578-1605693)
chr6 (1-116)||(29260191-29260306)
chr6 (1-105)||(13757218-13757322)
chr6 (1-105)||(30734646-30734750)
chr6 (1-115)||(8626482-8626596)
chr6 (1-116)||(7761300-7761413)
chr6 (1-118)||(15064857-15064974)
chr6 (1-100)||(31559899-31559998)
chr6 (1-105)||(30734773-30734875)
chr6 (1-60)||(4129482-4129541)
chr6 (1-100)||(8235639-8235738)
chr6 (1-105)||(17942453-17942559)
chr6 (114-156)||(7228147-7228189)
chr6 (74-117)||(19996727-19996770)
chr6 (1-64)||(21277597-21277659)
chr6 (1-57)||(3798161-3798217)
[»] chr4 (18 HSPs)
chr4 (1-116)||(14261043-14261158)
chr4 (1-120)||(24706410-24706529)
chr4 (1-116)||(21310424-21310539)
chr4 (1-116)||(22321430-22321545)
chr4 (1-116)||(25704650-25704765)
chr4 (1-116)||(12071560-12071675)
chr4 (1-116)||(40122648-40122763)
chr4 (1-116)||(44568836-44568951)
chr4 (1-118)||(50767861-50767978)
chr4 (1-115)||(34324745-34324860)
chr4 (5-117)||(21661702-21661814)
chr4 (5-117)||(21670466-21670578)
chr4 (1-105)||(20249176-20249279)
chr4 (1-119)||(1988032-1988149)
chr4 (1-67)||(6129111-6129177)
chr4 (5-57)||(20714514-20714567)
chr4 (5-102)||(31892251-31892344)
chr4 (1-55)||(34284180-34284234)
[»] chr2 (12 HSPs)
chr2 (1-117)||(3518906-3519022)
chr2 (1-115)||(1102503-1102617)
chr2 (1-115)||(39938170-39938284)
chr2 (1-114)||(23366790-23366903)
chr2 (1-115)||(37673900-37674014)
chr2 (1-116)||(12969902-12970017)
chr2 (1-87)||(1646317-1646401)
chr2 (1-65)||(19976382-19976445)
chr2 (1-65)||(35179098-35179162)
chr2 (1-38)||(22388298-22388335)
chr2 (6-56)||(14779838-14779888)
chr2 (74-115)||(34224390-34224431)
[»] chr7 (13 HSPs)
chr7 (1-116)||(10981507-10981622)
chr7 (1-115)||(40348960-40349074)
chr7 (1-117)||(27813809-27813925)
chr7 (1-105)||(36453287-36453391)
chr7 (1-104)||(47110462-47110563)
chr7 (20-115)||(25614533-25614628)
chr7 (1-57)||(3091575-3091631)
chr7 (1-67)||(16662144-16662208)
chr7 (1-67)||(17636504-17636568)
chr7 (74-117)||(25060145-25060188)
chr7 (34-92)||(37983179-37983237)
chr7 (1-57)||(16360442-16360496)
chr7 (5-57)||(7743564-7743615)
[»] chr3 (22 HSPs)
chr3 (1-115)||(46694273-46694387)
chr3 (1-117)||(3383074-3383190)
chr3 (1-116)||(13364842-13364957)
chr3 (1-115)||(23088094-23088208)
chr3 (1-116)||(19241831-19241946)
chr3 (1-116)||(29375137-29375252)
chr3 (1-115)||(198855-198969)
chr3 (1-115)||(36881282-36881394)
chr3 (1-105)||(43750147-43750251)
chr3 (11-105)||(32835129-32835223)
chr3 (5-100)||(13702784-13702879)
chr3 (37-115)||(27707363-27707441)
chr3 (8-64)||(1455318-1455374)
chr3 (34-98)||(48820448-48820512)
chr3 (1-63)||(19897090-19897152)
chr3 (74-116)||(44277467-44277509)
chr3 (73-121)||(19912173-19912221)
chr3 (73-120)||(38806340-38806387)
chr3 (74-116)||(12094581-12094623)
chr3 (6-56)||(37780996-37781046)
chr3 (74-116)||(48963155-48963197)
chr3 (34-86)||(53559806-53559858)
[»] chr1 (26 HSPs)
chr1 (1-115)||(23045442-23045556)
chr1 (1-115)||(284333-284447)
chr1 (1-116)||(23526239-23526354)
chr1 (1-116)||(40783820-40783935)
chr1 (1-115)||(321626-321740)
chr1 (1-115)||(24772068-24772182)
chr1 (1-114)||(27211127-27211240)
chr1 (1-118)||(46771634-46771751)
chr1 (1-95)||(33082765-33082859)
chr1 (1-115)||(47038015-47038127)
chr1 (1-100)||(52037285-52037382)
chr1 (7-69)||(1749353-1749415)
chr1 (1-64)||(1837992-1838053)
chr1 (1-65)||(3657127-3657191)
chr1 (73-117)||(44227846-44227890)
chr1 (74-117)||(9588668-9588711)
chr1 (73-116)||(9589630-9589673)
chr1 (74-116)||(3943059-3943101)
chr1 (5-55)||(40562748-40562797)
chr1 (74-115)||(13985003-13985044)
chr1 (7-56)||(18396754-18396803)
chr1 (74-115)||(41959078-41959119)
chr1 (1-65)||(52478018-52478080)
chr1 (4-56)||(7765072-7765124)
chr1 (73-117)||(41959808-41959852)
chr1 (7-115)||(51064925-51065033)
[»] chr8 (20 HSPs)
chr8 (1-118)||(40058466-40058583)
chr8 (1-105)||(2540094-2540198)
chr8 (1-115)||(3585451-3585565)
chr8 (1-115)||(11174386-11174500)
chr8 (1-105)||(11646488-11646592)
chr8 (1-115)||(7146913-7147027)
chr8 (1-115)||(43275562-43275674)
chr8 (1-115)||(37345571-37345685)
chr8 (1-105)||(30999686-30999788)
chr8 (1-116)||(40918894-40919007)
chr8 (1-115)||(36068080-36068194)
chr8 (1-115)||(27034997-27035110)
chr8 (20-104)||(20546469-20546553)
chr8 (1-105)||(28562431-28562536)
chr8 (22-65)||(28326838-28326881)
chr8 (74-121)||(41307973-41308020)
chr8 (74-116)||(8697910-8697952)
chr8 (1-57)||(13881117-13881174)
chr8 (74-115)||(45278713-45278754)
chr8 (1-65)||(37510316-37510380)
[»] scaffold1431 (1 HSPs)
scaffold1431 (1-105)||(62-166)
[»] chr5 (14 HSPs)
chr5 (1-115)||(12807016-12807130)
chr5 (1-115)||(25773649-25773763)
chr5 (1-115)||(30720655-30720769)
chr5 (1-118)||(10285220-10285337)
chr5 (5-115)||(36561266-36561376)
chr5 (1-115)||(40886773-40886887)
chr5 (5-104)||(7277589-7277688)
chr5 (1-116)||(37900787-37900902)
chr5 (1-65)||(25683391-25683455)
chr5 (1-116)||(16983257-16983374)
chr5 (1-65)||(23098397-23098461)
chr5 (1-65)||(30403124-30403189)
chr5 (74-115)||(15305224-15305265)
chr5 (1-116)||(39070882-39070997)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-116)||(45453-45568)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-100)||(428-525)
[»] scaffold1770 (1 HSPs)
scaffold1770 (1-60)||(217-276)
[»] scaffold0056 (1 HSPs)
scaffold0056 (1-67)||(70872-70938)
[»] scaffold0257 (1 HSPs)
scaffold0257 (74-115)||(23467-23508)


Alignment Details
Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 214 - 389
Target Start/End: Original strand, 7228247 - 7228426
Alignment:
Q  214 cgttgtatatagtattaggggtgttcacctaacattttctaacaataacacaagtactatgaaaggttttttcatgtaacgtannnnnnnngcattaggt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  7228247 cgttgtatatagtattaggggtgttcacctaacattttctaacaataacacaagtactatgaaaggttttttcatgtaacgtattttttttgcattaggt 7228346  T
Q  314 tcgggaaaatccaactgtataagtttcgttcattac-----tactcccacattataagttgctctctcttcactctttttc 389  Q
    ||| |||||| ||||||||| |||||||||||||||     |||||||| ||||||||||||| | |||||||||||||||    
T  7228347 tcgagaaaattcaactgtat-agtttcgttcattactaacttactcccatattataagttgctttatcttcactctttttc 7228426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 1605693 - 1605578
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  1605693 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 1605594  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||| || |||||||    
T  1605593 gaaacggagggagtat 1605578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 29260306 - 29260191
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  29260306 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 29260207  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||| || |||||||    
T  29260206 gaaacggagggagtat 29260191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 13757322 - 13757218
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  13757322 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgtaatttctccaaaatggacatgtatttt 13757223  T
Q  101 gaaac 105  Q
    |||||    
T  13757222 gaaac 13757218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 30734646 - 30734750
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  30734646 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 30734745  T
Q  101 gaaac 105  Q
    |||||    
T  30734746 gaaac 30734750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 8626596 - 8626482
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || ||||||| |||||| ||||||||||||    
T  8626596 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttcttcaaaatggacatgtatttt 8626497  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  8626496 gaaacggagggagta 8626482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 7761413 - 7761300
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||||||| ||||||||||||    
T  7761413 taagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttagtttcttggttagtgcaatttctccaaaatggacatgtatttt 7761316  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||| || |||||||    
T  7761315 gaaacggagggagtat 7761300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 15064857 - 15064974
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||| |||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| ||  || |||||||| ||||| ||||||||||||    
T  15064857 taagggtagtataaaaaacacacacataatttcatcaaaaataacaaaatttatttggtttcttggttgctgcaatttctctaaaatggacatgtatttt 15064956  T
Q  101 gaaaccgaaggagtattt 118  Q
    ||||| || |||||||||    
T  15064957 gaaacggagggagtattt 15064974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 31559899 - 31559998
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| ||| ||| ||| || |||||||||||||| ||||||||||||    
T  31559899 taagggtattacagaaaacatacacatattttcatcaaaaataacaaaatttatttgattttttggttaatgcaatttctccaaaatggacatgtatttt 31559998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 30734773 - 30734875
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    ||||||||||||||||||||||||  || ||| |||||||||||||||||||||||| ||| ||  ||| || ||||||| |||||| ||||||||||||    
T  30734773 taagggtattatagaaaacacaca--taatttcatcaaaaataacaaaatttatttgatttttttgttactgcaatttcttcaaaatggacatgtatttt 30734870  T
Q  101 gaaac 105  Q
    |||||    
T  30734871 gaaac 30734875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 4129541 - 4129482
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtt 60  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  4129541 taagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggtt 4129482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 8235738 - 8235639
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||| | | || |||||||||||| ||||||| |||||||| ||| || ||||||| ||||||  |||||||||||    
T  8235738 taagggtattatagaaaacacacacataatatcataaaaaataacaaattttatttcgtttcttggttactgcaatttcttcaaaatgtacatgtatttt 8235639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 17942559 - 17942453
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatt--tatttggtttcttgattagtgaaatttctccaaaatagacatgtatt 98  Q
    ||||||||||||||| ||||| |||||| ||| ||||||||||| ||||    |||||||||||||| ||| || |||||||| ||||| ||||||||||    
T  17942559 taagggtattatagagaacacgcacataatttcatcaaaaataaaaaaaaaaatatttggtttcttggttactgcaatttctcaaaaatggacatgtatt 17942460  T
Q  99 ttgaaac 105  Q
    |||||||    
T  17942459 ttgaaac 17942453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 7228147 - 7228189
Alignment:
Q  114 tatttgaacctcttataattcccaacatttatttcatacctca 156  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7228147 tatttgaacctcttataattcccaacatttatttcatacctca 7228189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 19996727 - 19996770
Alignment:
Q  74 aatttctccaaaatagacatgtattttgaaaccgaaggagtatt 117  Q
    |||||||||||||||||||||||||||||||| || ||||||||    
T  19996727 aatttctccaaaatagacatgtattttgaaacggagggagtatt 19996770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 21277597 - 21277659
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttctt 64  Q
    |||||||||||||||||| ||||| | ||||| || ||||||||||||||||||||| ||||||    
T  21277597 taagggtattatagaaaa-acacataaattttcataaaaaataacaaaatttatttgatttctt 21277659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3798217 - 3798161
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttg 57  Q
    ||||||| |||||||||| ||||| |||  || || |||||||||||||||||||||    
T  3798217 taagggtgttatagaaaaaacacaaataacttcatgaaaaataacaaaatttatttg 3798161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 6e-47; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 14261158 - 14261043
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  14261158 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 14261059  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||| || |||||||    
T  14261058 gaaacggagggagtat 14261043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 24706410 - 24706529
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  24706410 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 24706509  T
Q  101 gaaaccgaaggagtatttga 120  Q
    ||||| || |||||||||||    
T  24706510 gaaacggatggagtatttga 24706529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 21310539 - 21310424
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  21310539 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 21310440  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||| || |||||||    
T  21310439 gaaacggagggagtat 21310424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 22321430 - 22321545
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  22321430 taagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 22321529  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||| ||||||||||    
T  22321530 gaaacggaaggagtat 22321545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 25704765 - 25704650
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  25704765 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 25704666  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||| || |||||||    
T  25704665 gaaacggagggagtat 25704650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 12071675 - 12071560
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||| |||||||||||||| ||||||||||||    
T  12071675 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttagtttattggttagtgcaatttctccaaaatggacatgtatttt 12071576  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||| || |||||||    
T  12071575 gaaacggagggagtat 12071560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 40122648 - 40122763
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||| || |||||||||||||| ||||||||||||    
T  40122648 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggttttttggttactgcaatttctccaaaatggacatgtatttt 40122747  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||| || |||||||    
T  40122748 gaaacggagggagtat 40122763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 44568951 - 44568836
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||| |||||| ||||||| |||||| ||||||||||||    
T  44568951 taagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggttttttggttagtgcaatttcttcaaaatggacatgtatttt 44568852  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||| ||||||||||    
T  44568851 gaaacggaaggagtat 44568836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 50767978 - 50767861
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||  | |||||||||    
T  50767978 taagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttgattagtgcaatttctctaaaatgaatatgtatttt 50767879  T
Q  101 gaaaccgaaggagtattt 118  Q
    ||||| ||| ||||||||    
T  50767878 gaaacggaatgagtattt 50767861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 34324745 - 34324860
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaattt-atttggtttcttgattagtgaaatttctccaaaatagacatgtattt 99  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| |||||| |||||||||||||| |||||||||||    
T  34324745 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttaatttagtttcttggttagtgcaatttctccaaaatggacatgtattt 34324844  T
Q  100 tgaaaccgaaggagta 115  Q
    |||||| || ||||||    
T  34324845 tgaaacggagggagta 34324860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 21661702 - 21661814
Alignment:
Q  5 ggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtattttgaaa 104  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| || |||||||||||||| ||||||||||||||||    
T  21661702 ggtattatagaaaacacacacatattttcatcaaaaataataaaatttatttggtttcttggttactgcaatttctccaaaatggacatgtattttgaaa 21661801  T
Q  105 ccgaaggagtatt 117  Q
      || ||||||||    
T  21661802 gggagggagtatt 21661814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 21670466 - 21670578
Alignment:
Q  5 ggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtattttgaaa 104  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| || |||||||||||||| ||||||||||||||||    
T  21670466 ggtattatagaaaacacacacatattttcatcaaaaataaaaaaatttatttggtttcttggttactgcaatttctccaaaatggacatgtattttgaaa 21670565  T
Q  105 ccgaaggagtatt 117  Q
      || ||||||||    
T  21670566 gggagggagtatt 21670578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 20249176 - 20249279
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    ||||||||||||||||| |||||||||| |||  ||||||||||||||||||||||||||||||| ||| |  ||||| |||||||| ||||||||||||    
T  20249176 taagggtattatagaaa-cacacacataatttcttcaaaaataacaaaatttatttggtttcttggttaatacaatttatccaaaatggacatgtatttt 20249274  T
Q  101 gaaac 105  Q
    |||||    
T  20249275 gaaac 20249279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 1988149 - 1988032
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||| ||||| ||| ||||||||||| |||||||||||| ||||||  ||| || ||||||||| |||||||||| ||||||    
T  1988149 taagggtattatagaaaacacatacataatttcatcaaaaataataaaatttatttgatttcttagttactgcaatttctcc-aaatagacatatatttt 1988051  T
Q  101 gaaaccgaaggagtatttg 119  Q
     |||| || ||||||||||    
T  1988050 aaaacagatggagtatttg 1988032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 6129111 - 6129177
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgat 67  Q
    |||||||||| ||||||| | ||| | | |||||||||||||||||||||||||||| |||||||||    
T  6129111 taagggtattgtagaaaaaatacaaagaattttatcaaaaataacaaaatttatttgatttcttgat 6129177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 20714514 - 20714567
Alignment:
Q  5 ggtattatagaaaa-cacacacatatttttatcaaaaataacaaaatttatttg 57  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  20714514 ggtattatagaaaaacacacacatagtttcatcaaaaataacaaaatttatttg 20714567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 31892344 - 31892251
Alignment:
Q  5 ggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtattttga 102  Q
    ||||||||||||||    |||||| ||| ||||||||||| |||||||||||| ||||||| ||| || |||||||  |||||  |||||||||||||    
T  31892344 ggtattatagaaaa----cacataatttcatcaaaaataataaaatttatttgatttcttggttactgcaatttctttaaaatgaacatgtattttga 31892251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 34284180 - 34284234
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatt 55  Q
    |||||||||||||||||| | ||| ||| ||| ||||||| ||||||||||||||    
T  34284180 taagggtattatagaaaaaatacaaatagtttcatcaaaagtaacaaaatttatt 34284234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 3519022 - 3518906
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  3519022 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 3518923  T
Q  101 gaaaccgaaggagtatt 117  Q
    ||||| || ||||||||    
T  3518922 gaaacggagggagtatt 3518906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 1102617 - 1102503
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||||||||||    
T  1102617 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttactgcaatttctccaaaatggacatgtatttt 1102518  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  1102517 gaaacggagggagta 1102503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 39938284 - 39938170
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| | ||||||||||    
T  39938284 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggtcatgtatttt 39938185  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  39938184 gaaacggagggagta 39938170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 23366903 - 23366790
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  23366903 taagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 23366804  T
Q  101 gaaaccgaaggagt 114  Q
    ||||| || |||||    
T  23366803 gaaacggagggagt 23366790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 37673900 - 37674014
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||| ||||||||||||||  |||||||||||    
T  37673900 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaaaatgaacatgtatttt 37673999  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  37674000 gaaacggagggagta 37674014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 12969902 - 12970017
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  12969902 taagggtattatagaaaatatacacataatttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 12970001  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||| || |||||||    
T  12970002 gaaacggagggagtat 12970017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 1646401 - 1646317
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaat 87  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||||||||||| |||||||| ||  || ||||||||||||||    
T  1646401 taagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttagtttcttggttgctgcaatttctccaaaat 1646317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 19976445 - 19976382
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttg 65  Q
    |||||||||||||||||| | ||||||| ||||||||||| || ||||||||||||| |||||||    
T  19976445 taagggtattatagaaaaaa-acacataattttatcaaaagtaccaaaatttatttgatttcttg 19976382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 35179098 - 35179162
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttg 65  Q
    ||||| |||||||||||| ||||||| | ||| |||||||||||||||||||||||  |||||||    
T  35179098 taaggttattatagaaaaaacacacaaaatttcatcaaaaataacaaaatttatttcatttcttg 35179162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22388298 - 22388335
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaa 38  Q
    |||||||||||||||||||||||||||||||| |||||    
T  22388298 taagggtattatagaaaacacacacatattttcatcaa 22388335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 14779888 - 14779838
Alignment:
Q  6 gtattatagaaaacacacacatatttttatcaaaaataacaaaatttattt 56  Q
    ||||||||||||| ||||| ||| ||| ||||||||||| |||||||||||    
T  14779888 gtattatagaaaaaacacaaataatttcatcaaaaataaaaaaatttattt 14779838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 34224390 - 34224431
Alignment:
Q  74 aatttctccaaaatagacatgtattttgaaaccgaaggagta 115  Q
    |||||||||||||| ||||||||||||||||| || ||||||    
T  34224390 aatttctccaaaatggacatgtattttgaaacggagggagta 34224431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 10981622 - 10981507
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  10981622 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 10981523  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||| || |||||||    
T  10981522 gaaacggagggagtat 10981507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 40349074 - 40348960
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||||||||||    
T  40349074 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaaaatggacatgtatttt 40348975  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| |||||||||    
T  40348974 gaaacggaaggagta 40348960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 27813925 - 27813809
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  27813925 taagggtattatagaaaacacatacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 27813826  T
Q  101 gaaaccgaaggagtatt 117  Q
    ||||| || ||||||||    
T  27813825 gaaacggagggagtatt 27813809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 36453287 - 36453391
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  36453287 taagggtattatagaaaaaacacacatattttcatcaaaaataataaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 36453386  T
Q  101 gaaac 105  Q
    |||||    
T  36453387 gaaac 36453391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 47110563 - 47110462
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||||||| ||||||||||||    
T  47110563 taagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttattttgtttcttggttagtgcaatttctccaaaatggacatgtatttt 47110466  T
Q  101 gaaa 104  Q
    ||||    
T  47110465 gaaa 47110462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 25614533 - 25614628
Alignment:
Q  20 acacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtattttgaaaccgaaggagta 115  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||| |||||||||    
T  25614533 acacacatattttcatcaaaaataacaaaatttatttggttttttggttagtgcaatttctccaaaatggacatgtattttgaaacggaaggagta 25614628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3091631 - 3091575
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttg 57  Q
    |||||||||||||||||| ||||| | | ||| ||||||||||||||||||||||||    
T  3091631 taagggtattatagaaaaaacacaaagaatttcatcaaaaataacaaaatttatttg 3091575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 16662208 - 16662144
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgat 67  Q
    ||||||||||||| |||| ||||| ||  ||| |||||||||||||||||||||||  |||||||||    
T  16662208 taagggtattataaaaaaaacacaaat--tttcatcaaaaataacaaaatttattttatttcttgat 16662144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 17636568 - 17636504
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgat 67  Q
    ||||||||||||| |||| ||||| ||  ||| |||||||||||||||||||||||  |||||||||    
T  17636568 taagggtattataaaaaaaacacaaat--tttcatcaaaaataacaaaatttattttatttcttgat 17636504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 25060145 - 25060188
Alignment:
Q  74 aatttctccaaaatagacatgtattttgaaaccgaaggagtatt 117  Q
    |||||||||||||| ||||||||||||||||| || ||||||||    
T  25060145 aatttctccaaaatggacatgtattttgaaacggagggagtatt 25060188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 37983237 - 37983179
Alignment:
Q  34 atcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagaca 92  Q
    |||||||||||||||||||||||| |||||||||  ||| ||||||  |||||| ||||    
T  37983237 atcaaaaataacaaaatttatttgatttcttgatatgtgtaatttcctcaaaatggaca 37983179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 16360496 - 16360442
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttg 57  Q
    |||||||||||||||||| ||||| |   ||| ||||||||||||||||||||||||    
T  16360496 taagggtattatagaaaaaacacagaa--tttcatcaaaaataacaaaatttatttg 16360442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 7743564 - 7743615
Alignment:
Q  5 ggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttg 57  Q
    |||||||||||||  | ||||||| ||| ||||||||||||||||||||||||    
T  7743564 ggtattatagaaagaa-acacataatttcatcaaaaataacaaaatttatttg 7743615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 46694273 - 46694387
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  46694273 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttgattagtgcaatttctccaaaaaggacatgtatttt 46694372  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  46694373 gaaacggagggagta 46694387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 3383190 - 3383074
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||| ||||||    
T  3383190 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttactgcaatttctccaaaatggacatatatttt 3383091  T
Q  101 gaaaccgaaggagtatt 117  Q
    ||||| |||||||||||    
T  3383090 gaaacggaaggagtatt 3383074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 13364957 - 13364842
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||  |||||||||||    
T  13364957 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatgaacatgtatttt 13364858  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||| || |||||||    
T  13364857 gaaacggagggagtat 13364842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 23088094 - 23088208
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||| ||||||    
T  23088094 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttcttcaaaatagacatatatttt 23088193  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  23088194 gaaacagagggagta 23088208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 19241831 - 19241946
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||    
T  19241831 taagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttcaccaaaatggacatgtatttt 19241930  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||| || |||||||    
T  19241931 gaaacggagggagtat 19241946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 29375252 - 29375137
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| || |||||||||||||| ||||||||||||    
T  29375252 taagggtattatagaaaacacacacatattttcatcaaaaataagaaaatttatttggtttcttggttactgcaatttctccaaaatggacatgtatttt 29375153  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||| || |||||||    
T  29375152 gaaacggagggagtat 29375137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 198969 - 198855
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||||    
T  198969 taagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggtcagtgcaatttctccaaaatggacatgtatttt 198870  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  198869 gaaacggagggagta 198855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 36881394 - 36881282
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  36881394 taagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 36881297  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  36881296 gaaacggagggagta 36881282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 43750251 - 43750147
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||| ||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| ||| |  |||||||||||||| ||||||||||||    
T  43750251 taagtgtattatagaaaacacacatataatttcatcaaaaataacaaaatttatttggtttcttggttactccaatttctccaaaatggacatgtatttt 43750152  T
Q  101 gaaac 105  Q
    |||||    
T  43750151 gaaac 43750147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 32835129 - 32835223
Alignment:
Q  11 atagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtattttgaaac 105  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| ||| || |||||||||||||| |||||||||||||||||    
T  32835129 atagaaaacacacacataatttcatcaaaaataacaaaatttatttgttttcttggttattgcaatttctccaaaatggacatgtattttgaaac 32835223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 13702879 - 13702784
Alignment:
Q  5 ggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||| ||| ||| ||| |||||||||| ||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||    
T  13702879 ggtattatagaaaacaaacatataatttcatcaaaaatatcaaaatttatttggtttcttggttactgcaatttctccaaaataggcatgtatttt 13702784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 27707363 - 27707441
Alignment:
Q  37 aaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtattttgaaaccgaaggagta 115  Q
    ||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||||||||| ||||| || ||||||    
T  27707363 aaaaataacaaaatttatttggtttcttggttactgcaatttctccaaaatggacatgtatttcgaaacggagggagta 27707441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 1455318 - 1455374
Alignment:
Q  8 attatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttctt 64  Q
    ||||||||| | ||||| ||| |||||||||||||||||||||||||||| ||||||    
T  1455318 attatagaagaaacacaaataattttatcaaaaataacaaaatttatttgatttctt 1455374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 48820448 - 48820512
Alignment:
Q  34 atcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatt 98  Q
    |||||||||||||||||||||||||||| |||  ||  | ||||||||||||||| |||||||||    
T  48820448 atcaaaaataacaaaatttatttggtttattggataccgtaatttctccaaaataaacatgtatt 48820512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 19897090 - 19897152
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttct 63  Q
    |||||||||||||||||| ||||| | | ||| || ||||||||||||||||||||| |||||    
T  19897090 taagggtattatagaaaaaacacaaagaatttcataaaaaataacaaaatttatttgatttct 19897152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 44277467 - 44277509
Alignment:
Q  74 aatttctccaaaatagacatgtattttgaaaccgaaggagtat 116  Q
    |||||||||||||||||||||||||||||||| || |||||||    
T  44277467 aatttctccaaaatagacatgtattttgaaacggagggagtat 44277509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 19912173 - 19912221
Alignment:
Q  73 aaatttctccaaaatagacatgtattttgaaaccgaaggagtatttgaa 121  Q
    ||||||||| ||||| ||||||||||||||||| || ||||||||||||    
T  19912173 aaatttctctaaaatggacatgtattttgaaacggagggagtatttgaa 19912221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 38806340 - 38806387
Alignment:
Q  73 aaatttctccaaaatagacatgtattttgaaaccgaaggagtatttga 120  Q
    ||||||||| ||||| ||||||||||||||||| || |||||||||||    
T  38806340 aaatttctctaaaatggacatgtattttgaaacggagggagtatttga 38806387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 12094623 - 12094581
Alignment:
Q  74 aatttctccaaaatagacatgtattttgaaaccgaaggagtat 116  Q
    |||||||||||||| ||||||||||||||||| || |||||||    
T  12094623 aatttctccaaaatggacatgtattttgaaacggagggagtat 12094581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 37781046 - 37780996
Alignment:
Q  6 gtattatagaaaacacacacatatttttatcaaaaataacaaaatttattt 56  Q
    ||||||||||||| ||||||| | ||| ||||||||||| |||||||||||    
T  37781046 gtattatagaaaaaacacacagaatttcatcaaaaataataaaatttattt 37780996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 48963197 - 48963155
Alignment:
Q  74 aatttctccaaaatagacatgtattttgaaaccgaaggagtat 116  Q
    ||||||||||||||||| |||||||||||||| || |||||||    
T  48963197 aatttctccaaaatagatatgtattttgaaacggagggagtat 48963155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 53559806 - 53559858
Alignment:
Q  34 atcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaa 86  Q
    |||||||||||||| ||||||||| |||||||||  ||| ||||||| |||||    
T  53559806 atcaaaaataacaacatttatttgttttcttgatatgtgtaatttcttcaaaa 53559858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 23045442 - 23045556
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  23045442 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 23045541  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  23045542 gaaacggagggagta 23045556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 284447 - 284333
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  284447 taagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 284348  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  284347 gaaacggagggagta 284333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 23526354 - 23526239
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||  |||||||||||    
T  23526354 taagggtattatagaaaacacacacataatttcatcaaaaataacaaaatttatttggtttcttgattactgcaatttctccaaaatgaacatgtatttt 23526255  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||  ||||||||||    
T  23526254 gaaatggaaggagtat 23526239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 40783820 - 40783935
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||| ||||||||||||||  |||||||||||    
T  40783820 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaaaatgaacatgtatttt 40783919  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||| || |||||||    
T  40783920 gaaacggagggagtat 40783935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 321740 - 321626
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||  |||||||||||    
T  321740 taaggatattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatgaacatgtatttt 321641  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  321640 gaaacggagggagta 321626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 24772068 - 24772182
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |||||| ||||||| |||||| ||||||||||||    
T  24772068 taagggtattatagaaaatacacacataatttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttcttcaaaatggacatgtatttt 24772167  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  24772168 gaaacggagggagta 24772182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 27211127 - 27211240
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||| ||| |||  ||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||||||||||    
T  27211127 taagggtattatagaaaacacacatataatttcctcaaaaataacaaaatttatttggtttcttggttattgcaatttctccaaaatggacatgtatttt 27211226  T
Q  101 gaaaccgaaggagt 114  Q
    ||||| || |||||    
T  27211227 gaaacggagggagt 27211240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 46771751 - 46771634
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||  ||||||| ||| || |||||||||||||| ||||||||||||    
T  46771751 taagggtattatagaaaacacacacataatttcatcaaaaataacaaaatttatttaatttcttggttactgcaatttctccaaaatggacatgtatttt 46771652  T
Q  101 gaaaccgaaggagtattt 118  Q
    ||||| ||  ||||||||    
T  46771651 gaaacggatagagtattt 46771634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 33082859 - 33082765
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgt 95  Q
    |||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||    
T  33082859 taagggtattatagaaaatacacacataatttcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaaaatagacatgt 33082765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 47038015 - 47038127
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||  ||||||||| |||||||||||||||||||||||| ||||||  |||||  |||||||||||||| ||||||||||||    
T  47038015 taagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttgatttcttagttagtacaatttctccaaaatggacatgtatttt 47038112  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  47038113 gaaacggatggagta 47038127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 52037285 - 52037382
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||| |||||||||||||||||||  || ||||||||||||||| |||||||||||||||| |||  || || |||||||| ||||| ||||||||||||    
T  52037285 taagagtattatagaaaacacaca--taattttatcaaaaataataaaatttatttggttttttggataatgcaatttctctaaaatggacatgtatttt 52037382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 1749415 - 1749353
Alignment:
Q  7 tattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgatta 69  Q
    |||||||||||||||||| ||| ||| |||||||||||||||||||||||| |||||||||||    
T  1749415 tattatagaaaacacacatataatttcatcaaaaataacaaaatttatttgatttcttgatta 1749353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1837992 - 1838053
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttctt 64  Q
    |||||||||||||||||| |||||  || ||| |||||||||||||||||||||||| ||||||    
T  1837992 taagggtattatagaaaaaacaca--taatttcatcaaaaataacaaaatttatttgatttctt 1838053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3657191 - 3657127
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttg 65  Q
    ||||| |||||||||||| ||| ||| | ||| || ||||||||||||||||||||| |||||||    
T  3657191 taaggttattatagaaaaaacatacaaaatttcattaaaaataacaaaatttatttgatttcttg 3657127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 44227890 - 44227846
Alignment:
Q  73 aaatttctccaaaatagacatgtattttgaaaccgaaggagtatt 117  Q
    ||||||||||||||| ||||||||||||||||| || ||||||||    
T  44227890 aaatttctccaaaatggacatgtattttgaaacggagggagtatt 44227846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 9588711 - 9588668
Alignment:
Q  74 aatttctccaaaatagacatgtattttgaaaccgaaggagtatt 117  Q
    |||||||||||||| ||||||||||||||||| || ||||||||    
T  9588711 aatttctccaaaatggacatgtattttgaaacggagggagtatt 9588668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 9589630 - 9589673
Alignment:
Q  73 aaatttctccaaaatagacatgtattttgaaaccgaaggagtat 116  Q
    ||||||||| ||||||||||||||||||||||| || |||||||    
T  9589630 aaatttctctaaaatagacatgtattttgaaacggagggagtat 9589673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 3943101 - 3943059
Alignment:
Q  74 aatttctccaaaatagacatgtattttgaaaccgaaggagtat 116  Q
    |||||||||||||| ||||||||||||||||| || |||||||    
T  3943101 aatttctccaaaatggacatgtattttgaaacggagggagtat 3943059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 40562748 - 40562797
Alignment:
Q  5 ggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatt 55  Q
    |||||||||||||||||| | ||| ||| ||||||||||||||||||||||    
T  40562748 ggtattatagaaaacacatatataattt-atcaaaaataacaaaatttatt 40562797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 13985003 - 13985044
Alignment:
Q  74 aatttctccaaaatagacatgtattttgaaaccgaaggagta 115  Q
    |||||||||||||| ||||||||||||||||| || ||||||    
T  13985003 aatttctccaaaatggacatgtattttgaaacggatggagta 13985044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 18396803 - 18396754
Alignment:
Q  7 tattatagaaaacacacacatatttttatcaaaaataacaaaatttattt 56  Q
    ||||||||||||  |||||||| ||| || ||||||||||||||||||||    
T  18396803 tattatagaaaaaccacacataatttcataaaaaataacaaaatttattt 18396754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 41959119 - 41959078
Alignment:
Q  74 aatttctccaaaatagacatgtattttgaaaccgaaggagta 115  Q
    |||||||||||||| ||||||||||||||||| || ||||||    
T  41959119 aatttctccaaaatggacatgtattttgaaacggagggagta 41959078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 52478080 - 52478018
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttg 65  Q
    ||||| |||||||||||| ||||| |   ||| |||||||||||||||||||||||| |||||||    
T  52478080 taaggttattatagaaaaaacacaaaa--tttcatcaaaaataacaaaatttatttgatttcttg 52478018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 7765124 - 7765072
Alignment:
Q  4 gggtattatagaaaacacacacatatttttatcaaaaataacaaaatttattt 56  Q
    ||||||||  ||||||||||| ||| ||| | |||||||||||||||||||||    
T  7765124 gggtattacggaaaacacacatataatttcaccaaaaataacaaaatttattt 7765072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 41959808 - 41959852
Alignment:
Q  73 aaatttctccaaaatagacatgtattttgaaaccgaaggagtatt 117  Q
    ||||||||| ||||| ||||||||||||||||| || ||||||||    
T  41959808 aaatttctctaaaatggacatgtattttgaaacggagggagtatt 41959852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 51064925 - 51065033
Alignment:
Q  7 tattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtattttgaaacc 106  Q
    |||||||||||| ||||| | | ||| ||||||||| |||| ||||||||| || |||| |  ||| |||||||  ||||| |||| ||||| ||||||     
T  51064925 tattatagaaaaaacacaaagaatttcatcaaaaatgacaacatttatttgattccttggtatgtgtaatttctttaaaatggacaagtattgtgaaacg 51065024  T
Q  107 gaaggagta 115  Q
    || ||||||    
T  51065025 gagggagta 51065033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 40058466 - 40058583
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||| |||| ||||||||||||    
T  40058466 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccgaaatggacatgtatttt 40058565  T
Q  101 gaaaccgaaggagtattt 118  Q
    ||||| || |||||||||    
T  40058566 gaaacggagggagtattt 40058583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 2540094 - 2540198
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  2540094 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 2540193  T
Q  101 gaaac 105  Q
    |||||    
T  2540194 gaaac 2540198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 3585565 - 3585451
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  3585565 taagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 3585466  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  3585465 gaaacggagggagta 3585451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 11174386 - 11174500
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||  |||||||||||    
T  11174386 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatgaacatgtatttt 11174485  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  11174486 gaaacggagggagta 11174500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 11646488 - 11646592
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  11646488 taagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 11646587  T
Q  101 gaaac 105  Q
    |||||    
T  11646588 gaaac 11646592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 7147027 - 7146913
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || ||||||| |||||| ||||||||||||    
T  7147027 taagggtattataaaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttactgcaatttcttcaaaatggacatgtatttt 7146928  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| |||||||||    
T  7146927 gaaacggaaggagta 7146913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 43275562 - 43275674
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  43275562 taagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 43275659  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  43275660 gaaacggagggagta 43275674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 37345685 - 37345571
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || ||| ||||||| |||||| ||||||||||||    
T  37345685 taagggtattatagaaaacacacacatattttcattaaaaataacaaaatttatttggtttcttggttggtgcaatttcttcaaaatggacatgtatttt 37345586  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  37345585 gaaacggagggagta 37345571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 30999686 - 30999788
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  30999686 taagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaattgacatgtatttt 30999783  T
Q  101 gaaac 105  Q
    |||||    
T  30999784 gaaac 30999788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 40918894 - 40919007
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    ||||||||||||||||||||||||  | |||| || ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  40918894 taagggtattatagaaaacacaca--tgttttcataaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 40918991  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||| || |||||||    
T  40918992 gaaacggagggagtat 40919007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 36068194 - 36068080
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| ||| |||||  |||| ||||||||| ||||||||||||    
T  36068194 taagggtattatagaaaacacacatatattttcattaaaaataacaaaatttatttggttttttggttagtacaattcctccaaaatggacatgtatttt 36068095  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  36068094 gaaacggagggagta 36068080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 27035110 - 27034997
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    ||||||||||||||||| |||| ||||| ||| ||||||||||| |||| ||||||||||||||| ||| || |||||||||||||| ||||||||||||    
T  27035110 taagggtattatagaaa-cacagacataatttcatcaaaaataaaaaaaattatttggtttcttggttactgcaatttctccaaaatggacatgtatttt 27035012  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  27035011 gaaacggagggagta 27034997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 20546469 - 20546553
Alignment:
Q  20 acacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtattttgaaa 104  Q
    ||||||||| ||| |||||||||||||||||||||||  ||||||||||  || ||||||| |||||| ||||| ||||||||||    
T  20546469 acacacataatttcatcaaaaataacaaaatttatttaatttcttgattgttgcaatttcttcaaaatggacatatattttgaaa 20546553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 28562536 - 28562431
Alignment:
Q  1 taagggtattatagaaaaca-cacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtattt 99  Q
    |||||||||||||||||| | |||| | | ||| ||||||||| |||| ||||||||| || |||| |  ||| ||||||| |||||| |||| ||||||    
T  28562536 taagggtattatagaaaaaaacacaaagaatttcatcaaaaatgacaacatttatttgattccttggtatgtgtaatttcttcaaaatggacaagtattt 28562437  T
Q  100 tgaaac 105  Q
    ||||||    
T  28562436 tgaaac 28562431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 28326838 - 28326881
Alignment:
Q  22 acacatatttttatcaaaaataacaaaatttatttggtttcttg 65  Q
    ||||||| ||| |||||||||||||||||||||||| |||||||    
T  28326838 acacataatttcatcaaaaataacaaaatttatttgatttcttg 28326881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 41307973 - 41308020
Alignment:
Q  74 aatttctccaaaatagacatgtattttgaaaccgaaggagtatttgaa 121  Q
    |||||||||||||| ||||||||||||||||| || ||||||| ||||    
T  41307973 aatttctccaaaatggacatgtattttgaaacggagggagtatatgaa 41308020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 8697910 - 8697952
Alignment:
Q  74 aatttctccaaaatagacatgtattttgaaaccgaaggagtat 116  Q
    |||||||||||||| ||||||||||||||||| || |||||||    
T  8697910 aatttctccaaaatggacatgtattttgaaacggagggagtat 8697952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 13881117 - 13881174
Alignment:
Q  1 taagggtattatagaaaaca-cacacatatttttatcaaaaataacaaaatttatttg 57  Q
    |||||||||||||||||| | | |||| | ||| ||||||||||||||||||||||||    
T  13881117 taagggtattatagaaaaaaacgcacacaatttcatcaaaaataacaaaatttatttg 13881174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 45278713 - 45278754
Alignment:
Q  74 aatttctccaaaatagacatgtattttgaaaccgaaggagta 115  Q
    |||||||||||||| ||||||||||||||||| || ||||||    
T  45278713 aatttctccaaaatggacatgtattttgaaacggagggagta 45278754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 37510380 - 37510316
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttg 65  Q
    |||||||||||| ||||| | | | | | |||||| |||||||||||||||||||| ||||||||    
T  37510380 taagggtattattgaaaaaatagaaagaattttattaaaaataacaaaatttatttagtttcttg 37510316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 62 - 166
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  62 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 161  T
Q  101 gaaac 105  Q
    |||||    
T  162 gaaac 166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 12807016 - 12807130
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||||||||||    
T  12807016 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttctccaaaatggacatgtatttt 12807115  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  12807116 gaaacggagggagta 12807130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 25773763 - 25773649
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||||||||||    
T  25773763 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaaaatggacatgtatttt 25773664  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  25773663 gaaacggagggagta 25773649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 30720655 - 30720769
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  30720655 taagggtattataaaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtatttt 30720754  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  30720755 gaaacggagggagta 30720769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 10285220 - 10285337
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| || |||||||||||||||||||| ||||||    
T  10285220 taagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttagtttcttggttaatgcaatttctccaaaatagacatctatttt 10285319  T
Q  101 gaaaccgaaggagtattt 118  Q
    ||||| || |||||||||    
T  10285320 gaaacggagggagtattt 10285337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 36561266 - 36561376
Alignment:
Q  5 ggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtattttgaaa 104  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| || ||||| ||||||||||||||||    
T  36561266 ggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttgattactgcaatttttctaaaatggacatgtattttgaaa 36561365  T
Q  105 ccgaaggagta 115  Q
    | || ||||||    
T  36561366 cggatggagta 36561376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 40886773 - 40886887
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| | ||||||| |||||| ||||||||||||||  |||||||||||    
T  40886773 taagggtattatagaaaatacacacatattttcatcaaaaataacaaaatttattcgatttcttggttagtgcaatttctccaaaatgaacatgtatttt 40886872  T
Q  101 gaaaccgaaggagta 115  Q
    ||||| || ||||||    
T  40886873 gaaacggatggagta 40886887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 7277589 - 7277688
Alignment:
Q  5 ggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtattttgaaa 104  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||| |  |||||||||||||||||||||||||||||||    
T  7277589 ggtattatagaaaacacacacataatttgatcaaaaataacaaaatttatttggtttattggttactccaatttctccaaaatagacatgtattttgaaa 7277688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 37900787 - 37900902
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||||||||| ||| ||| |||||||||| |||||||||||| |||||||| ||| || |||||||||||||| ||  ||||||||    
T  37900787 taagggtattatagaaaacacacatataatttcatcaaaaatatcaaaatttatttagtttcttggttactgcaatttctccaaaatggatgtgtatttt 37900886  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||| || |||||||    
T  37900887 gaaacggagggagtat 37900902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 25683391 - 25683455
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttg 65  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25683391 taagggtattatagaaaacacacacataattttatcaaaaataacaaaatttatttggtttcttg 25683455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 16983374 - 16983257
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaat--ttatttggtttcttgattagtgaaatttctccaaaatagacatgtatt 98  Q
    |||||||||| ||||||| ||||| ||  ||| |||||||| || ||||   ||||||||||||||| ||| || |||||||||||||| ||||||||||    
T  16983374 taagggtattgtagaaaaaacacatatcatttcatcaaaaaaaaaaaaaaaattatttggtttcttggttactgcaatttctccaaaatggacatgtatt 16983275  T
Q  99 ttgaaaccgaaggagtat 116  Q
    ||||||| || |||||||    
T  16983274 ttgaaacagagggagtat 16983257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 23098397 - 23098461
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttg 65  Q
    |||||||||||||| |||||  |||||| ||| ||||||||||||||||||||||| ||||||||    
T  23098397 taagggtattataggaaacatgcacataatttcatcaaaaataacaaaatttatttagtttcttg 23098461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30403124 - 30403189
Alignment:
Q  1 taagggtattatagaaaacaca-cacatatttttatcaaaaataacaaaatttatttggtttcttg 65  Q
    |||| ||||||||||||| | | |||| | ||| ||||||||||||||||||||||||||||||||    
T  30403124 taagagtattatagaaaaaaaaacacagaatttcatcaaaaataacaaaatttatttggtttcttg 30403189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 15305224 - 15305265
Alignment:
Q  74 aatttctccaaaatagacatgtattttgaaaccgaaggagta 115  Q
    |||||||||||||| ||||||||||||||||| || ||||||    
T  15305224 aatttctccaaaatggacatgtattttgaaacggagggagta 15305265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 39070997 - 39070882
Alignment:
Q  1 taagggtattatagaaaacacac-acatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtattt 99  Q
    |||||||||||||||||| |||| ||| | ||| ||||||||| |||| ||||||||| || ||| ||  ||| ||||||| ||||||  ||| |||||     
T  39070997 taagggtattatagaaaaaacacaacaga-tttcatcaaaaatgacaacatttatttgattccttaatatgtgtaatttcttcaaaatgaacaagtattg 39070899  T
Q  100 tgaaaccgaaggagtat 116  Q
    |||||| || |||||||    
T  39070898 tgaaacggagggagtat 39070882  T

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Target: scaffold0054 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 45568 - 45453
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    |||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||  |||||||||||    
T  45568 taagggtattatagaaaatacacacataatttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaatgaacatgtatttt 45469  T
Q  101 gaaaccgaaggagtat 116  Q
    ||||| || |||||||    
T  45468 gaaacggagggagtat 45453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 428 - 525
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgattagtgaaatttctccaaaatagacatgtatttt 100  Q
    ||||||||||||| ||||||||||  || |||||||||||||||||||||||||||| ||| ||||||| || |||||| |||||||  |||||||||||    
T  428 taagggtattataaaaaacacaca--taattttatcaaaaataacaaaatttatttgattttttgattactgcaatttcgccaaaatgaacatgtatttt 525  T

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Target: scaffold1770 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 276 - 217
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtt 60  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  276 taagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggtt 217  T

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Target: scaffold0056 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 70938 - 70872
Alignment:
Q  1 taagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttgat 67  Q
    ||||||| ||| |||||| ||||||| | ||| |||||||||||||||||||||||| |||||||||    
T  70938 taagggtgttacagaaaaaacacacagaatttcatcaaaaataacaaaatttatttgatttcttgat 70872  T

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Target: scaffold0257 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 23508 - 23467
Alignment:
Q  74 aatttctccaaaatagacatgtattttgaaaccgaaggagta 115  Q
    |||||||||||||| ||||||||||||||||| || ||||||    
T  23508 aatttctccaaaatggacatgtattttgaaacggagggagta 23467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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