View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_3 (Length: 633)
Name: NF10271_low_3
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 3 - 535
Target Start/End: Complemental strand, 32996476 - 32995946
Alignment:
| Q |
3 |
aggagatttgaaaaggactaattctacaggtgacttagaagacttgaaagacaaagatgaaaaagttttgaataagcttggaacaccaaagaaaaattat |
102 |
Q |
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| T |
32996476 |
aggagatttgaaaaggactaattctacaagtgacttagaagacttgaaagagaaagatgaaaaagttttgaataagcttggaacaccaaagaaaaattat |
32996377 |
T |
|
| Q |
103 |
tacttggacaagcttgagtatttgaatgctataagaagtcctatcgcgcgacattaatatcggtaacgaaaaaagggaagattataaaagttcaatgcag |
202 |
Q |
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| T |
32996376 |
tacttggacaagcttgaatatttgaatgctataagaagtcctatcgcgcgacattaatatcggtaacgaaaaaagggaagattataaaagttcaatgcag |
32996277 |
T |
|
| Q |
203 |
atgtaaacaaacac--agattcagaccttggttatgcagtagtagaaactcttgtgtacttctctt---agcataaacaacttgtacattatgtaaagcc |
297 |
Q |
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| T |
32996276 |
atgtaaacaaacacaaagattaagaccttggttatgcagtagtagaatctcttgtgtgtttttcttctcagcataaccagcttgtacattatgtaaagtc |
32996177 |
T |
|
| Q |
298 |
tcttaggttattgtgtaatttctgtacttgtagttaattctttttatttcttcaaaatagtggaagactcatagtacctctactaatgttactgttgaaa |
397 |
Q |
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| T |
32996176 |
tcttaggttattgtgtaatttctgtacttgta---aattc-ttttatttcttcaaaatagtggaaggttcatagtacttctactaatgttactgttaaaa |
32996081 |
T |
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| Q |
398 |
tgatcaaatgatgacttttgaataggaatttgattaagactacaattctttactttggtaaaaatatctttgaaaattacttttgcaaggttgattttgt |
497 |
Q |
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| T |
32996080 |
tggtcaa---aagacttttgaataggagtttgattaacactacaattctttactttggtaaaaatctctttgaaaagtacttttgcaagcttgattttgt |
32995984 |
T |
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| Q |
498 |
ttagttcaaaagttgtaagttcaacgatttatgttttt |
535 |
Q |
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| T |
32995983 |
ttagttcaaaagttgcaagttcaacggtttatgttttt |
32995946 |
T |
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