View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10271_low_30 (Length: 402)

Name: NF10271_low_30
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10271_low_30
NF10271_low_30
[»] chr3 (18 HSPs)
chr3 (18-389)||(26652910-26653282)
chr3 (196-383)||(19848924-19849117)
chr3 (196-383)||(20036594-20036787)
chr3 (267-380)||(30914651-30914764)
chr3 (281-389)||(26647026-26647134)
chr3 (281-372)||(19812302-19812393)
chr3 (281-381)||(20046145-20046245)
chr3 (281-389)||(24839959-24840070)
chr3 (266-389)||(19956091-19956217)
chr3 (281-343)||(19853534-19853596)
chr3 (281-342)||(19858094-19858155)
chr3 (281-348)||(20016230-20016297)
chr3 (281-342)||(19951146-19951207)
chr3 (281-343)||(19943742-19943802)
chr3 (281-342)||(19838415-19838476)
chr3 (289-389)||(19818587-19818687)
chr3 (281-336)||(19989544-19989599)
chr3 (73-191)||(26646345-26646459)
[»] chr4 (2 HSPs)
chr4 (281-390)||(6398283-6398392)
chr4 (281-364)||(6397751-6397834)
[»] chr7 (5 HSPs)
chr7 (291-381)||(12581424-12581514)
chr7 (291-381)||(12497241-12497331)
chr7 (291-381)||(12521106-12521196)
chr7 (291-389)||(12580070-12580167)
chr7 (291-389)||(12519781-12519878)
[»] chr1 (1 HSPs)
chr1 (281-389)||(1717236-1717344)
[»] chr8 (4 HSPs)
chr8 (281-389)||(22685668-22685776)
chr8 (281-339)||(22652126-22652184)
chr8 (283-348)||(22689684-22689749)
chr8 (285-389)||(11564119-11564226)
[»] chr5 (2 HSPs)
chr5 (281-389)||(9815059-9815167)
chr5 (281-389)||(26354912-26355023)


Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 26652910 - 26653282
Alignment:
Q  18 aaaggatacattggggttttcacacattcaccattcattttcccttggtatacactgtagtacaatttttgtggccaataacgtagcctttccaaattaa 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26652910 aaaggatacattggggttttcacacattcaccattcattctcccttcgtatacactgtagtacaatttttgtggccaacaacgtagcctttccaaattaa 26653009  T
Q  118 gcaatgtaaccatttttgttttgaaagttgagtgttatacccatgatgaatgaacaagcattagaag-atactatgaagaagctcaacattccaagaaaa 216  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||    
T  26653010 gcaaagtaaccatttttgttttgaaagttgagtgttatacccatgatgaatgaacaagcattagaaatatactatgaagaagctcaacattgcaagaaaa 26653109  T
Q  217 caacttaatagcaaacacggaggtgtggctaacacaccaacatgaatgtatattttaattgactaaggtagtgaaattgaacatgaagcattccttgctg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| |    
T  26653110 caacttaatagcaaacacggaggtgtggctaacacaccaacatgaatggatattttcattgactaaggtagtgaaattgaacatgatgcattccttgcag 26653209  T
Q  317 cttggttgtcaatttttgtttttcctcgtaaagaattagtgaaaagttctttgttttctattgctgttcatct 389  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  26653210 cttggttgtcaatttttgtttttcctcatatagaattagtgaaaagttctttgttttctattgctgttcatct 26653282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 196 - 383
Target Start/End: Original strand, 19848924 - 19849117
Alignment:
Q  196 aagctcaacattccaagaaaacaacttaata--gc-aaacacggaggtgtggctaacacaccaacatgaatgtatattttaattgactaaggtagtgaaa 292  Q
    ||||||| |||| ||||| ||||||||| ||  || ||||| ||||||||||||| |||| ||   || ||| ||||||| |||||  ||||||||||||    
T  19848924 aagctcatcattgcaagacaacaacttactaatgcgaaacatggaggtgtggctagcacatcatactggatggatattttcattgataaaggtagtgaaa 19849023  T
Q  293 ttgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaa---gaattagtgaaaagttctttgttttctattgctgt 383  Q
    |||||||||||||||| |||||| ||||||||||| ||||||||||||||| ||||    | || |||||||||||||||||| ||||||||||    
T  19849024 ttgaacatgaagcatttcttgctacttggttgtcactttttgtttttcctcataaaaactatttggtgaaaagttctttgtttcctattgctgt 19849117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 196 - 383
Target Start/End: Complemental strand, 20036787 - 20036594
Alignment:
Q  196 aagctcaacattccaagaaaacaacttaata--gc-aaacacggaggtgtggctaacacaccaacatgaatgtatattttaattgactaaggtagtgaaa 292  Q
    ||||||| |||| ||||| ||||||||| ||  || ||||| ||||||||||||| |||| ||   || ||| ||||||| |||||  ||||||||||||    
T  20036787 aagctcatcattgcaagacaacaacttactaatgcgaaacatggaggtgtggctagcacatcatactggatggatattttcattgataaaggtagtgaaa 20036688  T
Q  293 ttgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaa---gaattagtgaaaagttctttgttttctattgctgt 383  Q
    |||||||||||||||| |||||| ||||||||||| ||||||||||||||| ||||    | || |||||||||||||||||| ||||||||||    
T  20036687 ttgaacatgaagcatttcttgctacttggttgtcactttttgtttttcctcataaaaactatttggtgaaaagttctttgtttcctattgctgt 20036594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 267 - 380
Target Start/End: Original strand, 30914651 - 30914764
Alignment:
Q  267 tattttaattgactaaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaagaattagtgaaaagttct 366  Q
    |||||| |||||  ||| |||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||  ||||| || |||||||||| |    
T  30914651 tattttcattgataaagttagtgaaattgaacatgaagcattccttactacttggttgtcaatttttgttttccctcacaaagatttggtgaaaagtttt 30914750  T
Q  367 ttgttttctattgc 380  Q
    |||||| |||||||    
T  30914751 ttgtttcctattgc 30914764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 281 - 389
Target Start/End: Original strand, 26647026 - 26647134
Alignment:
Q  281 aaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaagaattagtgaaaagttctttgttttctattgc 380  Q
    |||||||||||||||||||||||||||||||| || ||||||||||| ||| ||||||||||| |  | | || |||||||||| ||||||| |||||||    
T  26647026 aaggtagtgaaattgaacatgaagcattcctttctacttggttgtcagtttatgtttttcctcatctaaatttggtgaaaagttgtttgtttcctattgc 26647125  T
Q  381 tgttcatct 389  Q
    |||||||||    
T  26647126 tgttcatct 26647134  T

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Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 281 - 372
Target Start/End: Original strand, 19812302 - 19812393
Alignment:
Q  281 aaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaagaattagtgaaaagttctttgttt 372  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||| | || |||||||  |||||||||    
T  19812302 aaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaatatttggtgaaaaagtctttgttt 19812393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 281 - 381
Target Start/End: Original strand, 20046145 - 20046245
Alignment:
Q  281 aaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaagaattagtgaaaagttctttgttttctattgc 380  Q
    ||||||||||||||||||| ||||| |||||| || ||||||||||||||||||||||||||| |||| |  | ||||||| || |||||||||||||||    
T  20046145 aaggtagtgaaattgaacacgaagccttccttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctattgc 20046244  T
Q  381 t 381  Q
    |    
T  20046245 t 20046245  T

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Target: chr3; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 281 - 389
Target Start/End: Complemental strand, 24840070 - 24839959
Alignment:
Q  281 aaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaagaat---tagtgaaaagttctttgttttctat 377  Q
    ||||||||||| |||| ||||||||||| |||||| |||||||||||||||||||||| |||| |||| | |   |||||||| ||||||||||| || |    
T  24840070 aaggtagtgaagttgagcatgaagcatttcttgctacttggttgtcaatttttgttttccctcataaatactctctagtgaaatgttctttgtttcctgt 24839971  T
Q  378 tgctgttcatct 389  Q
    ||||||||||||    
T  24839970 tgctgttcatct 24839959  T

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Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 389
Target Start/End: Original strand, 19956091 - 19956217
Alignment:
Q  266 atattttaattgactaaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaaga---attagtgaaaag 362  Q
    ||||||| |||||  ||||||||||||||||||||||||| || |||||| |||||||||||||||||||||| |||| |||| |    |  ||||||||    
T  19956091 atattttcattgataaaggtagtgaaattgaacatgaagcttttcttgctacttggttgtcaatttttgttttccctcataaatattcttccgtgaaaag 19956190  T
Q  363 ttctttgttttctattgctgttcatct 389  Q
    || ||||||| |||||| |||||||||    
T  19956191 ttatttgtttcctattgttgttcatct 19956217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 281 - 343
Target Start/End: Original strand, 19853534 - 19853596
Alignment:
Q  281 aaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctc 343  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  19853534 aaggtagtgaaattgaacatgaagcatttcttgctacttggttgtctatttttgtttttcctc 19853596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 281 - 342
Target Start/End: Original strand, 19858094 - 19858155
Alignment:
Q  281 aaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcct 342  Q
    |||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||    
T  19858094 aaggtagtgaaattgagcatgaagcatttcttgctacttggttgtcaatttttgtttttcct 19858155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 281 - 348
Target Start/End: Complemental strand, 20016297 - 20016230
Alignment:
Q  281 aaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaa 348  Q
    |||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| |||| ||||    
T  20016297 aaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa 20016230  T

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Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 342
Target Start/End: Original strand, 19951146 - 19951207
Alignment:
Q  281 aaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcct 342  Q
    ||||||||||||||||||||||||| ||||||| | ||||||||||| ||||||||||||||    
T  19951146 aaggtagtgaaattgaacatgaagccttccttgttacttggttgtcactttttgtttttcct 19951207  T

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Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 281 - 343
Target Start/End: Original strand, 19943742 - 19943802
Alignment:
Q  281 aaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctc 343  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||  |||||||||||||    
T  19943742 aaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcaa--tttgtttttcctc 19943802  T

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Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 342
Target Start/End: Original strand, 19838415 - 19838476
Alignment:
Q  281 aaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcct 342  Q
    ||||||| ||||||||||||||||| || || ||| ||||||||||||||||||||||||||    
T  19838415 aaggtagcgaaattgaacatgaagcttttctagctacttggttgtcaatttttgtttttcct 19838476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 389
Target Start/End: Original strand, 19818587 - 19818687
Alignment:
Q  289 gaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaagaattagtgaaaagttctttgttttctattgctgttcatc 388  Q
    ||||||||||||||||| || |||||| ||||||| ||||||||||||||||||| |||  | || ||||||| || | ||||| || |||||||| |||    
T  19818587 gaaattgaacatgaagcttttcttgctacttggttatcaatttttgtttttcctcataagaatttggtgaaaaattatctgtttcctgttgctgttaatc 19818686  T
Q  389 t 389  Q
    |    
T  19818687 t 19818687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 336
Target Start/End: Original strand, 19989544 - 19989599
Alignment:
Q  281 aaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtt 336  Q
    |||||| |||| |||||||||||||||| |||||| ||||||||||||||||||||    
T  19989544 aaggtaatgaacttgaacatgaagcatttcttgctacttggttgtcaatttttgtt 19989599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 191
Target Start/End: Original strand, 26646345 - 26646459
Alignment:
Q  73 tgtagtacaatttttgtggccaataacgtagcctttccaaattaagcaatgtaaccatttttgttttg-aaagttgagtgttatacccatgatgaatgaa 171  Q
    |||| ||||| |||||| ||||| |||||||||||| ||||  |||     ||||||||||| ||||  |||| ||||||| ||||||||||||||||||    
T  26646345 tgtactacaaattttgttgccaacaacgtagcctttgcaaagaaag-----taaccattttttttttttaaagctgagtgtgatacccatgatgaatgaa 26646439  T
Q  172 caagcattagaagatactat 191  Q
    ||| |||| |||||||||||    
T  26646440 caaacattggaagatactat 26646459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 281 - 390
Target Start/End: Original strand, 6398283 - 6398392
Alignment:
Q  281 aaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaagaattagtgaaaagttctttgttttctattgc 380  Q
    ||||||||||||||||||||||||| |||||||||  |||||||| |||||||||||||||| |||||  | | |||||||||| |||||||||||||||    
T  6398283 aaggtagtgaaattgaacatgaagccttccttgctaattggttgttaatttttgtttttcctagtaaaacaatggtgaaaagttgtttgttttctattgc 6398382  T
Q  381 tgttcatctc 390  Q
    |||| |||||    
T  6398383 tgttaatctc 6398392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 281 - 364
Target Start/End: Complemental strand, 6397834 - 6397751
Alignment:
Q  281 aaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaagaattagtgaaaagtt 364  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||| || |||||||| |||| || | ||||||||||    
T  6397834 aaggtagtgaaattgaacatgaagccttccttgctacctggttgtcaatttgtgcttttcctcctaaaaaaatggtgaaaagtt 6397751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 381
Target Start/End: Original strand, 12581424 - 12581514
Alignment:
Q  291 aattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaagaattagtgaaaagttctttgttttctattgct 381  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| | || | |||||||||| ||||||||||||||||    
T  12581424 aattgaacatgaagccttccttgctacttggttgtcaatttttgtttttcctcgtagaaaaatggtgaaaagttatttgttttctattgct 12581514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 381
Target Start/End: Original strand, 12497241 - 12497331
Alignment:
Q  291 aattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaagaattagtgaaaagttctttgttttctattgct 381  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||||||||||| || | || | |||| ||||| ||||||||||||||||    
T  12497241 aattgaacatgaagccttccttgctacctggttgtcaatttttgtttttcctcatagaaaaatggtgataagttatttgttttctattgct 12497331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 381
Target Start/End: Original strand, 12521106 - 12521196
Alignment:
Q  291 aattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaagaattagtgaaaagttctttgttttctattgct 381  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||||||||||| || | || | |||| ||||| ||||||||||||||||    
T  12521106 aattgaacatgaagccttccttgctacctggttgtcaatttttgtttttcctcatagaaaaatggtgataagttatttgttttctattgct 12521196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 389
Target Start/End: Complemental strand, 12580167 - 12580070
Alignment:
Q  291 aattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaagaattagtgaaaagttctttgttttctattgctgttcatct 389  Q
    |||||||||||| || ||||||  | ||||||||||||||||||||||||||| |||| || | |||| ||||| |||||||||| ||| |||| ||||    
T  12580167 aattgaacatgaggccttcctttttacttggttgtcaatttttgtttttcctcataaa-aaatggtgacaagttgtttgttttctgttggtgttaatct 12580070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 389
Target Start/End: Complemental strand, 12519878 - 12519781
Alignment:
Q  291 aattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaagaattagtgaaaagttctttgttttctattgctgttcatct 389  Q
    ||||||||||||||| ||||||    ||||||||||||||||||||||||||| |||| || | |||| || || |||||||||| ||| |||| ||||    
T  12519878 aattgaacatgaagccttccttttaacttggttgtcaatttttgtttttcctcataaa-aaatggtgacaaattgtttgttttctgttggtgttaatct 12519781  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 281 - 389
Target Start/End: Original strand, 1717236 - 1717344
Alignment:
Q  281 aaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaagaattagtgaaaagttctttgttttctattgc 380  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||  ||| ||||||||||| |||||  || |||||||  ||||||||| |||||||    
T  1717236 aaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctattgc 1717335  T
Q  381 tgttcatct 389  Q
    |||||||||    
T  1717336 tgttcatct 1717344  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 281 - 389
Target Start/End: Complemental strand, 22685776 - 22685668
Alignment:
Q  281 aaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaagaattagtgaaaagttctttgttttctattgc 380  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||| ||||   || ||||||| |||| ||||| | |||||    
T  22685776 aaggtagtgaaattgagcatgaagcatttcttgctgcttggttgtcactttttgtttttcctcataaaattttggtgaaaacttctatgtttccgattgc 22685677  T
Q  381 tgttcatct 389  Q
    | |||||||    
T  22685676 tattcatct 22685668  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 22652184 - 22652126
Alignment:
Q  281 aaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgttttt 339  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  22652184 aaggtagtgaaattgaacatgaagcgttccttgctacttggttgtcaatttttgttttt 22652126  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 348
Target Start/End: Complemental strand, 22689749 - 22689684
Alignment:
Q  283 ggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaa 348  Q
    |||| |||| |||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||    
T  22689749 ggtaatgaatttgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaa 22689684  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 389
Target Start/End: Complemental strand, 11564226 - 11564119
Alignment:
Q  285 tagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaagaattagtg---aaaagttctttgttttctattgct 381  Q
    |||| |||||||||||||||||||| || |||| ||| | || |||||||||||||||| ||||   ||  ||   ||||||||||||||| ||||||||    
T  11564226 tagtaaaattgaacatgaagcattcatttctgcatggctttccatttttgtttttcctcataaaagcttgttgatcaaaagttctttgtttcctattgct 11564127  T
Q  382 gttcatct 389  Q
    ||||||||    
T  11564126 gttcatct 11564119  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 281 - 389
Target Start/End: Original strand, 9815059 - 9815167
Alignment:
Q  281 aaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaagaattagtgaaaagttctttgttttctattgc 380  Q
    |||||||||||||||| |||||||| ||| ||||| | ||||||||||| ||||||||  ||| ||||   || ||||||||||||||||||||||||||    
T  9815059 aaggtagtgaaattgagcatgaagcgttcattgctacgtggttgtcaatctttgttttaactcataaatctttggtgaaaagttctttgttttctattgc 9815158  T
Q  381 tgttcatct 389  Q
    | |||||||    
T  9815159 tattcatct 9815167  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 281 - 389
Target Start/End: Complemental strand, 26355023 - 26354912
Alignment:
Q  281 aaggtagtgaaattgaacatgaagcattccttgctgcttggttgtcaatttttgtttttcctcgtaaa-gaa--ttagtgaaaagttctttgttttctat 377  Q
    ||||||||||| ||||||||||||||||| ||| ||||||||| |||||||||||||||||| | ||| | |  || |||||||||||||||||| ||||    
T  26355023 aaggtagtgaagttgaacatgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtgaaaagttctttgtttcctat 26354924  T
Q  378 tgctgttcatct 389  Q
    |||| |||||||    
T  26354923 tgctattcatct 26354912  T

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