View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_31 (Length: 399)
Name: NF10271_low_31
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 385
Target Start/End: Complemental strand, 20071778 - 20071412
Alignment:
| Q |
19 |
tacaagccatagttacactcaaacaagtataaactatgaatcaacaacaatcataaaaactgaaaaataaatttgttgcaagatcttacgtctgagaatc |
118 |
Q |
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| T |
20071778 |
tacaagccatagatacactcaaacaagtataaactatgaatcaacaacaatcataaaaactgaaaaataaatttgttgcaagatcttacgtctgagaatc |
20071679 |
T |
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| Q |
119 |
acaatatttatttataatgattagaggaaaagaccaagcagatacttagccaaaaaagttatcaaacaattggagtgcaaagacattgatcattacggct |
218 |
Q |
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| T |
20071678 |
acaatatttatttataatgattagaggaaaagaccaagcagatacttagccaaaaaagttatcaaacaattggagtgcaaagacattgatcattacggct |
20071579 |
T |
|
| Q |
219 |
atcttacacattcatccgtcttgtgtggatatgatgatttaaggaggaatttcgtcctcaaagcatatataatgtgagtctgacacgtcaaacagaagaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20071578 |
atcttacacattcatccgtcttgtgtggatatgatgatttaaggaggaatttcgtcctcaaagcatatataatgtgagtctgacacatcaaacagaagaa |
20071479 |
T |
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| Q |
319 |
gagaagttttcggagacaaaacctaagcttatctttggaaattcttatttaagttttacaaacttaa |
385 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20071478 |
gagaagttttcggagacaatacctaagcttatctttggaaattcttatttaagttttacaaacttaa |
20071412 |
T |
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