View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_32 (Length: 398)
Name: NF10271_low_32
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Original strand, 33907750 - 33908123
Alignment:
| Q |
19 |
ttaaggctgttgaacttcaccttgttccagaataccaacacccatgaattggtttaatgtagccatttggttggccatagccatagaagcatggtttgta |
118 |
Q |
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| T |
33907750 |
ttaaggctgctgaacttcaccttgttccagcataccaacacccatgaattggtttaatgtagccatttggttggccatagccatagaagcatggtttgta |
33907849 |
T |
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| Q |
119 |
ttcttgatcaacaacgtgataactgccccatctgttgagtgaaatgttcaccttctgatggttgctatttatccatctgttgtcaaacaatcatcatcga |
218 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
33907850 |
ttcttgatcaactatgtgataactgccccatctgttgagtgaaatgttcaccttctgatggttgctatttgtccatctgttgtcaaacaatcgtcatcga |
33907949 |
T |
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| Q |
219 |
atcttatgtcaatctgacatgattctatggtatatttgaaaaacctaggccaagttaattaccctggccatatgacatgtctgccaacgagttaataaga |
318 |
Q |
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| T |
33907950 |
atcttatgtcaatctgacatgattctatggtatatttgaaaaacctaggccaag----ttaccctggccatatgacatgtctgccaacgagttaataaga |
33908045 |
T |
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| Q |
319 |
ctcggcaacattaattctaatggtaggcctaataggtcagcaactactgggcgtgactacatgaaagttatgtctgtg |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33908046 |
ctcggcaacattaattctaatggtaggcctaataggtcagcaactactgggcgtgactacatgaaagttatgtctgtg |
33908123 |
T |
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