View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10271_low_33 (Length: 391)

Name: NF10271_low_33
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10271_low_33
NF10271_low_33
[»] chr3 (8 HSPs)
chr3 (1-379)||(46995717-46996095)
chr3 (1-374)||(46997970-46998343)
chr3 (1-361)||(46980907-46981267)
chr3 (31-374)||(47001662-47002005)
chr3 (3-361)||(46974920-46975278)
chr3 (206-359)||(46951480-46951633)
chr3 (204-339)||(46955837-46955972)
chr3 (146-359)||(46958673-46958886)


Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 46996095 - 46995717
Alignment:
Q  1 ccctcacacttttccatttctatcccctctcaggtcgttttgttactaaaaaatccgaagatcctcattcttacactgtttttgtcgattgcaaaaacag 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46996095 ccctcacacttttccatttctatcccctctcaggtcgtcttgttactaaaaaatccgaagatcctcattcttacactgtttttgtcgattgcaaaaacag 46995996  T
Q  101 tcccggagctaaatttattcatgcaactttagatattaccatcaatgatattctctcaccagttgatgtcccacccattgttcattcattttttgaccat 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  46995995 tctcggagctaaatttattcatgcaactttagatattaccatcaatgatattctctcaccaattgatgtcccacccattgttcattcattctttgaccat 46995896  T
Q  201 cacagagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46995895 cacagagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacg 46995796  T
Q  301 ctgttggtgatggaactgcttattggaatttctttaatacactttctgagatatttcaaaaggttgttgatgttgatgt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46995795 ctgttggtgatggaactgcttattggaatttctttaatacactttctgagatatttcaaaaggttgttgatgttgatgt 46995717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 46998343 - 46997970
Alignment:
Q  1 ccctcacacttttccatttctatcccctctcaggtcgttttgttactaaaaaatccgaagatcctcattcttacactgtttttgtcgattgcaaaaacag 100  Q
    |||||||||||||||||||| ||||||||||||| ||| |||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||||||||    
T  46998343 ccctcacacttttccatttccatcccctctcaggccgtcttgttactaaaaaatctgaagaccctcatttttacactgtttttgttgattgcaaaaacag 46998244  T
Q  101 tcccggagctaaatttattcatgcaactttagatattaccatcaatgatattctctcaccagttgatgtcccacccattgttcattcattttttgaccat 200  Q
    || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||     
T  46998243 tctcggagctaaatttattcatgcaactttagatatcaccatcaatgatattctctcacctgttgatgtgccacctattgttcattcattctttgaccac 46998144  T
Q  201 cacagagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  ||||||| ||||||||||||||||| ||      
T  46998143 cacagagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcatt 46998044  T
Q  301 ctgttggtgatggaactgcttattggaatttctttaatacactttctgagatatttcaaaaggttgttgatgtt 374  Q
     | ||||||||||||||| ||||||||||||||||||  || ||||||||||||||||||| | |||| |||||    
T  46998043 gtattggtgatggaactggttattggaatttctttaactcattttctgagatatttcaaaatgatgttcatgtt 46997970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 46981267 - 46980907
Alignment:
Q  1 ccctcacacttttccatttctatcccctctcaggtcgttttgttactaaaaaatccgaagatcctcattcttacactgtttttgtcgattgcaaaaacag 100  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  46981267 ccctcacgcttttccatttctatcccctctcaggtcgtcttgttactaaaaaatccgaagatcctgattcttacactgttttcgtcgattgcaaaaacag 46981168  T
Q  101 tcccggagctaaatttattcatgcaactttagatattaccatcaatgatattctctcaccagttgatgtcccacccattgttcattcattttttgaccat 200  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| | ||  ||||||||||||||||||| ||||| || ||||| |||    
T  46981167 tcccggagctaaatttattcatgcaactttagatatcaccataaatgatatcctcacccccattgatgtcccacccattgtccattcgttctttgatcat 46981068  T
Q  201 cacagagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacg 300  Q
     ||| |||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||||||||| ||      
T  46981067 gacaaagcagtcaaccatgatggtcataccatgtctttgttgtctattcaagtcactgaattagtagatggtgttttcattggttgttccatgaatcatt 46980968  T
Q  301 ctgttggtgatggaactgcttattggaatttctttaatacactttctgagatatttcaaaa 361  Q
     | || |||||||||| ||||||||||||||||| || ||| |||||||||||||||||||    
T  46980967 gtctttgtgatggaacagcttattggaatttcttcaacacattttctgagatatttcaaaa 46980907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 31 - 374
Target Start/End: Complemental strand, 47002005 - 47001662
Alignment:
Q  31 caggtcgttttgttactaaaaaatccgaagatcctcattcttacactgtttttgtcgattgcaaaaacagtcccggagctaaatttattcatgcaacttt 130  Q
    |||||| | |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||    
T  47002005 caggtcttcttgttactcaaaaatctgaagatcctcattcttacactgtttttgtcgattgcaaaaacagtcgaggagctaaatttattcttgcaacttt 47001906  T
Q  131 agatattaccatcaatgatattctctcaccagttgatgtcccacccattgttcattcattttttgaccatcacagagcagtcaaccatgatggacacacc 230  Q
    |||||| ||| |||||| |||||||||||| ||||||||||||||||| ||| | || || |||||||| ||||||||||| ||||||||||| ||||||    
T  47001905 agatatcaccgtcaatgttattctctcacctgttgatgtcccacccatagttaaatcgttctttgaccaccacagagcagttaaccatgatggtcacacc 47001806  T
Q  231 atgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctgttggtgatggaactgcttattggaatt 330  Q
    |||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| ||   | ||||||||||||| |||||||||||||    
T  47001805 atgtctttgttgtctattcaagtcactgaattattggatggtgttttcataggttgttccatgaatcattgtattggtgatggaacagcttattggaatt 47001706  T
Q  331 tctttaatacactttctgagatatttcaaaaggttgttgatgtt 374  Q
    |||| || ||| |||| |||||||||||||| | |||| |||||    
T  47001705 tcttcaacacattttcggagatatttcaaaatgatgttcatgtt 47001662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 361
Target Start/End: Complemental strand, 46975278 - 46974920
Alignment:
Q  3 ctcacacttttccatttctatcccctctcaggtcgttttgttactaaaaaatccgaagatcctcattcttacactgtttttgtcgattgcaaaaacagtc 102  Q
    ||||||||||| ||||  |||||||| || |||||| |||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||    
T  46975278 ctcacactttttcattattatcccctgtctggtcgtcttgttactaaaaaatctgaagaccctcattcttacactgttttcgttgattgcaaaaacagtc 46975179  T
Q  103 ccggagctaaatttattcatgcaactttagatattaccatcaatgatattctctcaccagttgatgtcccacccattgttcattcattttttgaccatca 202  Q
     |||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || || || ||||| ||| |    
T  46975178 gcggagctagatttattcatgcaactttagatatcaccataaatgatattctctcaccagttgatgtcccacccattgtccaatcgttctttgatcatga 46975079  T
Q  203 cagagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgct 302  Q
    || |||||||| ||||||||| || ||||||||||| ||  | |||||||| ||||||||||| || |||||||| ||||||||||||||||| ||   |    
T  46975078 caaagcagtcagccatgatggtcataccatgtctttattaactattcaagtaactgaattattggatggtgtttttataggttgttccatgaatcattgt 46974979  T
Q  303 gttggtgatggaactgcttattggaatttctttaatacactttctgagatatttcaaaa 361  Q
     | |||||||| |||| ||||||||||||||||||  || |||||||||||||||||||    
T  46974978 ataggtgatgggactggttattggaatttctttaactcattttctgagatatttcaaaa 46974920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 206 - 359
Target Start/End: Complemental strand, 46951633 - 46951480
Alignment:
Q  206 agcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctgtt 305  Q
    |||| ||||||| || || ||||||||| | ||||| ||||| |||||||||||  || |||| |||||||||||||||||||| ||||| |||  | ||    
T  46951633 agcaatcaaccacgacggtcacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggttgttctatgaatcactatatt 46951534  T
Q  306 ggtgatggaactgcttattggaatttctttaatacactttctgagatatttcaa 359  Q
    |||||||||||| |||||||||||||||||||||||   ||||| |||||||||    
T  46951533 ggtgatggaacttcttattggaatttctttaatacatggtctgaaatatttcaa 46951480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 204 - 339
Target Start/End: Complemental strand, 46955972 - 46955837
Alignment:
Q  204 agagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctg 303  Q
    |||||| |||| |||||||| ||||||||| | ||| | |||||||||||||| ||||||   || |||||||||||||||||||||||||||||   |     
T  46955972 agagcaatcaatcatgatggtcacaccatgccgttgctatccattcaagtcacggaattaggggatggtgttttcataggttgttccatgaaccattgta 46955873  T
Q  304 ttggtgatggaactgcttattggaatttctttaata 339  Q
    |||||||||| ||| ||| |||||||||||| ||||    
T  46955872 ttggtgatgggacttctttttggaatttcttcaata 46955837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 146 - 359
Target Start/End: Complemental strand, 46958886 - 46958673
Alignment:
Q  146 tgatattctctcaccagttgatgtcccacccattgttcattcattttttgaccatcacagagcagtcaaccatgatggacacaccatgtctttgttgtcc 245  Q
    |||||| |||||||| |||||||| || || |||||| | ||||| ||||| |   ||| |||| ||||||| || || ||||||||| | ||||| ||     
T  46958886 tgatatcctctcacctgttgatgttcctccaattgttgagtcattctttgatctcaacaaagcaatcaaccacgacggtcacaccatgccattgttatca 46958787  T
Q  246 attcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctgttggtgatggaactgcttattggaatttctttaatacacttt 345  Q
    ||||||||||| ||  || | || ||||||||||||||||||||| |||| ||   | |||||||||| ||  |||  |||||||| ||||||| |   |    
T  46958786 attcaagtcacagagctagtggatggtgttttcataggttgttccctgaatcattgtattggtgatggtacctctttctggaatttttttaatatatggt 46958687  T
Q  346 ctgagatatttcaa 359  Q
    ||||||||||||||    
T  46958686 ctgagatatttcaa 46958673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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