View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10271_low_34 (Length: 391)

Name: NF10271_low_34
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10271_low_34
NF10271_low_34
[»] chr8 (7 HSPs)
chr8 (24-368)||(3679392-3679746)
chr8 (245-293)||(16457473-16457521)
chr8 (245-293)||(24995407-24995455)
chr8 (245-293)||(31207374-31207422)
chr8 (244-290)||(32945714-32945760)
chr8 (244-293)||(15906707-15906756)
chr8 (245-293)||(9519520-9519568)
[»] chr3 (7 HSPs)
chr3 (222-354)||(31424196-31424328)
chr3 (245-354)||(24712599-24712706)
chr3 (244-292)||(14193962-14194010)
chr3 (245-293)||(17550978-17551026)
chr3 (245-293)||(19176523-19176571)
chr3 (254-293)||(37123403-37123442)
chr3 (245-292)||(43012397-43012444)
[»] chr4 (4 HSPs)
chr4 (219-354)||(6599930-6600066)
chr4 (245-291)||(30167576-30167622)
chr4 (244-292)||(21387215-21387263)
chr4 (245-293)||(30964462-30964510)
[»] chr6 (7 HSPs)
chr6 (222-289)||(32316393-32316460)
chr6 (237-332)||(34092777-34092872)
chr6 (222-284)||(15487690-15487751)
chr6 (263-293)||(26534749-26534779)
chr6 (245-293)||(3117514-3117562)
chr6 (244-292)||(13423488-13423536)
chr6 (245-293)||(16510313-16510361)
[»] chr7 (8 HSPs)
chr7 (245-293)||(38306282-38306330)
chr7 (245-293)||(10244203-10244251)
chr7 (245-293)||(13311860-13311908)
chr7 (245-292)||(41089760-41089807)
chr7 (244-294)||(11379138-11379188)
chr7 (244-293)||(6716747-6716796)
chr7 (244-293)||(12480907-12480956)
chr7 (244-332)||(2613878-2613966)
[»] scaffold0620 (1 HSPs)
scaffold0620 (237-332)||(8111-8206)
[»] chr2 (4 HSPs)
chr2 (244-293)||(22885144-22885193)
chr2 (244-293)||(4471944-4471993)
chr2 (244-293)||(33788643-33788692)
chr2 (245-293)||(39338877-39338925)
[»] chr1 (7 HSPs)
chr1 (244-293)||(5389432-5389481)
chr1 (245-293)||(31585772-31585820)
chr1 (245-293)||(41920473-41920521)
chr1 (244-303)||(27102202-27102261)
chr1 (244-293)||(17033607-17033656)
chr1 (245-293)||(5459182-5459230)
chr1 (245-293)||(30685916-30685964)
[»] chr5 (3 HSPs)
chr5 (245-294)||(7195251-7195300)
chr5 (40-76)||(26367774-26367810)
chr5 (253-293)||(34378119-34378159)


Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 24 - 368
Target Start/End: Complemental strand, 3679746 - 3679392
Alignment:
Q  24 accttcaacacttatggagaacaacaaccattaaaaccaacttcaccacctaaatcgagtttcatagcctgctactcatccnnnnnnngacacacctcta 123  Q
    |||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||  |||       ||||||||||||    
T  3679746 accttcaacacttatg-agaacaacagccattaaaactaacttcaccacctaaatcgagttccatagcctgctacttgtccaaaaaaagacacacctcta 3679648  T
Q  124 aatcaaacatcatccactcatcactatatttgagccacatccgataaatgtcatattccaacgcttagccagcttccaccacc-----------gatcca 212  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||           ||||||    
T  3679647 aatcaaacatcatccactcatcactatatttgagccacacccgataaatgtcatattccaacgcttagccaacttccaccacctctctaccaccgatcca 3679548  T
Q  213 tcaaagatgaacaccataattatcccaaagtaaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggctagttagactctagaaaca 312  Q
    || ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||  || ||||||||||||||||||    
T  3679547 tcgaagataaacaccataattatcccaaagcaaacttgaatcaaagcaccgactcccgatctcgaatcaaaagtgataagccagttagactctagaaaca 3679448  T
Q  313 aatcagtaaagtacccctcaccctcgatcaaccggagaagactccttaaccggcca 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3679447 aatcagtaaagtacccctcaccctcgatcaaccggagaagactccataaccggcca 3679392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 16457473 - 16457521
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||| |||||| || ||||||| |||||||||||||||||||||||    
T  16457473 aacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggc 16457521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 24995407 - 24995455
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||| |||||| || ||||||| |||||||||||||||||||||||    
T  24995407 aacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggc 24995455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 31207374 - 31207422
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||| |||||| || ||||||| |||||||||||||||||||||||    
T  31207374 aacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggc 31207422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 32945714 - 32945760
Alignment:
Q  244 aaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatc 290  Q
    ||||||||||||||| |  ||||||| ||||||||||||||||||||    
T  32945714 aaacttgaatcaaagaattgactcccgatctcgaatcaaaagtgatc 32945760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 15906756 - 15906707
Alignment:
Q  244 aaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||||| ||||| || ||||||| ||||||||||||| |||||||||    
T  15906756 aaacttgaaccaaagaactgactcccgatctcgaatcaaatgtgatcggc 15906707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 9519568 - 9519520
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||| |||||| || ||||||| |||||||||||||| ||||||||    
T  9519568 aacttgagtcaaagaactgactcccgatctcgaatcaaaactgatcggc 9519520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 222 - 354
Target Start/End: Complemental strand, 31424328 - 31424196
Alignment:
Q  222 aacaccataattatcccaaagtaaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggctagttagactctagaaacaaatcagtaa 321  Q
    ||||||| | ||| ||||||| | |||||||||||||||| ||||||| ||||||||||||||| || ||||     |||||||  ||||||||||||||    
T  31424328 aacaccaaatttagcccaaaggagacttgaatcaaagcactgactcccgatctcgaatcaaaagcgaccggcctaccagactctgaaaacaaatcagtaa 31424229  T
Q  322 agtacccctcaccctcgatcaaccggagaagac 354  Q
     | ||||||||||| ||||||||||||||||||    
T  31424228 ggcacccctcacccccgatcaaccggagaagac 31424196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 354
Target Start/End: Complemental strand, 24712706 - 24712599
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggctagttagactctagaaacaaatcagtaaagtacccctcaccctcgatcaac 344  Q
    ||||||||||||||||| |||||| | |||||||| |||| ||| ||||     | |||| |||||||||||||||| | ||||||||||| ||||||||    
T  24712706 aacttgaatcaaagcactgactccga-tctcgaataaaaaatgaccggcccaccatactccagaaacaaatcagtaaggcacccctcaccc-cgatcaac 24712609  T
Q  345 cggagaagac 354  Q
    ||||||||||    
T  24712608 cggagaagac 24712599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 14194010 - 14193962
Alignment:
Q  244 aaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcgg 292  Q
    ||||||||  ||||| |||||||||||||||||||||||||||||||||    
T  14194010 aaacttgagccaaagaaccgactcccaatctcgaatcaaaagtgatcgg 14193962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 17551026 - 17550978
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||| |||||| || ||||||| |||||||||||||||||||||||    
T  17551026 aacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggc 17550978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 19176571 - 19176523
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||| |||||| || ||||||| |||||||||||||||||||||||    
T  19176571 aacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggc 19176523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 37123442 - 37123403
Alignment:
Q  254 caaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  37123442 caaagaactgactcccaatctcgaatcaaaagtgatcggc 37123403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 43012444 - 43012397
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcgg 292  Q
    ||||||| |||||| || ||||||| ||||||||||||||||||||||    
T  43012444 aacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcgg 43012397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 354
Target Start/End: Original strand, 6599930 - 6600066
Alignment:
Q  219 atgaacaccataattatcccaaagtaaa-cttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggctagttagactctagaaacaaatca 317  Q
    ||||||||||||| || ||||||  ||| |||||||||||| |||||||||| ||||| ||||||||| |||||||     ||||||||||  |||||||    
T  6599930 atgaacaccataaatagcccaaaacaaaacttgaatcaaagaaccgactcccgatctctaatcaaaagcgatcggcccaccagactctagagccaaatca 6600029  T
Q  318 gtaaagtacccctcaccctcgatcaaccggagaagac 354  Q
    |||| || | |||||| ||||||| |||| |||||||    
T  6600030 gtaaggtcctcctcacgctcgatccaccgaagaagac 6600066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 30167576 - 30167622
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcg 291  Q
    ||||||| |||||| |||||||||| |||||||||||||||||||||    
T  30167576 aacttgagtcaaagaaccgactcccgatctcgaatcaaaagtgatcg 30167622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 21387215 - 21387263
Alignment:
Q  244 aaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcgg 292  Q
    ||||||||||| ||| || |||| || ||||||||||||||||||||||    
T  21387215 aaacttgaatcgaagaactgacttccgatctcgaatcaaaagtgatcgg 21387263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 30964510 - 30964462
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||| |||||| || ||||||| ||| |||||||||||||||||||    
T  30964510 aacttgagtcaaagaacggactcccgatcacgaatcaaaagtgatcggc 30964462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 32316460 - 32316393
Alignment:
Q  222 aacaccataattatcccaaagtaaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgat 289  Q
    ||||||||||||| ||||||||||||||||||||||| ||  ||| || |||||||||||||||||||    
T  32316460 aacaccataattagcccaaagtaaacttgaatcaaagaacttactaccgatctcgaatcaaaagtgat 32316393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 332
Target Start/End: Complemental strand, 34092872 - 34092777
Alignment:
Q  237 ccaaagtaaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggctagttagactctagaaacaaatcagtaaagtacccctca 332  Q
    |||||| ||||||||||||||| |  |||| || ||||||||||||||||||||||||    |||||| | | |||||||||||| ||||| ||||    
T  34092872 ccaaagcaaacttgaatcaaagaatagacttcctatctcgaatcaaaagtgatcggctcaccagactccaaagacaaatcagtaatgtacctctca 34092777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 15487751 - 15487690
Alignment:
Q  222 aacaccataattatcccaaagtaaacttgaatcaaagcaccgactcccaatctcgaatcaaaa 284  Q
    ||||||| ||||| ||||||| |||||||||||||| ||||||||||| ||||| ||| ||||    
T  15487751 aacaccaaaattaccccaaagcaaacttgaatcaaa-caccgactcccgatctcaaataaaaa 15487690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 293
Target Start/End: Original strand, 26534749 - 26534779
Alignment:
Q  263 gactcccaatctcgaatcaaaagtgatcggc 293  Q
    |||||||||||||||||||||||||||||||    
T  26534749 gactcccaatctcgaatcaaaagtgatcggc 26534779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 3117562 - 3117514
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||| |||||| || ||||||| |||| ||||||||||||||||||    
T  3117562 aacttgagtcaaagaactgactcccgatcttgaatcaaaagtgatcggc 3117514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 13423536 - 13423488
Alignment:
Q  244 aaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcgg 292  Q
    ||||||||  ||||| |||||||| | ||||||||||||||||||||||    
T  13423536 aaacttgagccaaagaaccgactctcgatctcgaatcaaaagtgatcgg 13423488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 16510313 - 16510361
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||| | |||| || ||||| |||||||||||||||||||||||||    
T  16510313 aacttgagtaaaagaactgactctcaatctcgaatcaaaagtgatcggc 16510361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 38306330 - 38306282
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||| |||||| || |||||||||||||||||||||||||||||||    
T  38306330 aacttgagtcaaagaactgactcccaatctcgaatcaaaagtgatcggc 38306282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 10244251 - 10244203
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||| |||||| || ||||||| |||||||||||||||||||||||    
T  10244251 aacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggc 10244203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 13311908 - 13311860
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    |||||||| ||||| || ||||||| |||||||||||||||||||||||    
T  13311908 aacttgaaccaaagaactgactcccgatctcgaatcaaaagtgatcggc 13311860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 41089760 - 41089807
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcgg 292  Q
    ||||||| ||||||  | ||||||||||||||||||||||||||||||    
T  41089760 aacttgagtcaaagagctgactcccaatctcgaatcaaaagtgatcgg 41089807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 11379138 - 11379188
Alignment:
Q  244 aaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggct 294  Q
    ||||||||| ||||| || ||||||| ||||||||||||||| ||||||||    
T  11379138 aaacttgaaccaaagtactgactcccgatctcgaatcaaaagcgatcggct 11379188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 6716747 - 6716796
Alignment:
Q  244 aaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||||  ||||| || ||||||| |||||||||||||||||||||||    
T  6716747 aaacttgagccaaagaactgactcccgatctcgaatcaaaagtgatcggc 6716796  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 12480956 - 12480907
Alignment:
Q  244 aaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||||| ||||| || ||||||| ||||||||||||||| |||||||    
T  12480956 aaacttgaaccaaagaactgactcccgatctcgaatcaaaagcgatcggc 12480907  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 2613878 - 2613966
Alignment:
Q  244 aaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggctagttagactctagaaacaaatcagtaaagtacccctca 332  Q
    ||||||||||||| ||||  ||| || ||||||||||||||||||| ||| |   ||| || |||  ||||||||||| ||||||||||    
T  2613878 aaacttgaatcaaggcactaacttccgatctcgaatcaaaagtgattggccaaccagattccagactcaaatcagtaaggtacccctca 2613966  T

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Target: scaffold0620 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 332
Target Start/End: Complemental strand, 8206 - 8111
Alignment:
Q  237 ccaaagtaaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggctagttagactctagaaacaaatcagtaaagtacccctca 332  Q
    |||||| ||||||||||||||| |  |||| || ||||||||||||||||||||||||    |||||| | | |||||||||||| ||||| ||||    
T  8206 ccaaagcaaacttgaatcaaagaatagacttcctatctcgaatcaaaagtgatcggctcaccagactccaaagacaaatcagtaatgtacctctca 8111  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 22885144 - 22885193
Alignment:
Q  244 aaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||||| ||||| || ||||||| |||||||||||||||||||||||    
T  22885144 aaacttgaaccaaagaactgactcccgatctcgaatcaaaagtgatcggc 22885193  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 4471993 - 4471944
Alignment:
Q  244 aaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||||||||||| || ||||||| ||||||||||||| | |||||||    
T  4471993 aaacttgaatcaaagaactgactcccgatctcgaatcaaaggcgatcggc 4471944  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 33788643 - 33788692
Alignment:
Q  244 aaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    |||| |||| ||||| || ||||||||||||||||||||||| |||||||    
T  33788643 aaacctgaaccaaagaactgactcccaatctcgaatcaaaagcgatcggc 33788692  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 39338877 - 39338925
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||| |||||| || ||||||| ||||||||||||||| |||||||    
T  39338877 aacttgagtcaaagaactgactcccgatctcgaatcaaaagcgatcggc 39338925  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 5389432 - 5389481
Alignment:
Q  244 aaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    |||||||| |||||| || ||||||| |||||||||||||||||||||||    
T  5389432 aaacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggc 5389481  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 31585772 - 31585820
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||| |||||| || ||||||| |||||||||||||||||||||||    
T  31585772 aacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggc 31585820  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 41920521 - 41920473
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||| |||||| || ||||||| |||||||||||||||||||||||    
T  41920521 aacttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggc 41920473  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 27102261 - 27102202
Alignment:
Q  244 aaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggctagttagact 303  Q
    ||||||||  ||||| || ||||||| |||||||||||||||||||||||  ||||||||    
T  27102261 aaacttgatccaaagaactgactcccgatctcgaatcaaaagtgatcggcccgttagact 27102202  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 17033656 - 17033607
Alignment:
Q  244 aaacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||||| ||||| || ||||||| ||||||| |||||||||||||||    
T  17033656 aaacttgaaccaaagaactgactcccgatctcgattcaaaagtgatcggc 17033607  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 5459230 - 5459182
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    |||||||||||||  |  ||||||| |||||||||||||||||||||||    
T  5459230 aacttgaatcaaataattgactcccgatctcgaatcaaaagtgatcggc 5459182  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 30685916 - 30685964
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    ||||||| |||||| || ||||||| ||||| |||||||||||||||||    
T  30685916 aacttgagtcaaagaactgactcccgatctcaaatcaaaagtgatcggc 30685964  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 7195251 - 7195300
Alignment:
Q  245 aacttgaatcaaagcaccgactcccaatctcgaatcaaaagtgatcggct 294  Q
    |||||||  ||||| || ||||||| ||||||||||||||||||||||||    
T  7195251 aacttgagccaaagaactgactcccgatctcgaatcaaaagtgatcggct 7195300  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 26367774 - 26367810
Alignment:
Q  40 gagaacaacaaccattaaaaccaacttcaccacctaa 76  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  26367774 gagaacaacaaccatcaaatccaacttcaccacctaa 26367810  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 34378159 - 34378119
Alignment:
Q  253 tcaaagcaccgactcccaatctcgaatcaaaagtgatcggc 293  Q
    |||||| || ||||||| |||||||||||||||||||||||    
T  34378159 tcaaagaactgactcccgatctcgaatcaaaagtgatcggc 34378119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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