View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_37 (Length: 380)
Name: NF10271_low_37
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 7e-68; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 215 - 361
Target Start/End: Original strand, 3737036 - 3737182
Alignment:
| Q |
215 |
taagttgtatcagttgcttagttagtttgcacctgatgcagaaattaggagaacggaaaggcatatgaacaggaagacaatgtataatttgctagcagaa |
314 |
Q |
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| T |
3737036 |
taagttgtatcagttgcttagttagtttgtacctgatgcagaaattaggagaacggaaaggcatataaacaagaagacaatgtataatttgctagcagaa |
3737135 |
T |
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| Q |
315 |
gaaatcatgatttctaaatccaaataatgttccataaagaagtgacc |
361 |
Q |
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| T |
3737136 |
gaaatcatgatttctaaatccaaataatgttctataaagaagtgacc |
3737182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 3736821 - 3736972
Alignment:
| Q |
1 |
aaaaatatgggattggaggcacacaataaccgtaagttgcatggtctttgttgatgcaaacttcattacaattggacttatcacaaccatttgtatgctc |
100 |
Q |
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| T |
3736821 |
aaaaatatgggattgaaggcacacaataaccgtaagttgcatggtctttgttgatgcaaacttcattacaattggacttatcacaaccatttgtatgctc |
3736920 |
T |
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| Q |
101 |
aacatttgtatgatgcttaactctacaannnnnnncttttgcctctacacag |
152 |
Q |
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| T |
3736921 |
aacatttgtatgatgcttaactctacaatttttttcttttgcctctacacag |
3736972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 226 - 340
Target Start/End: Original strand, 3740420 - 3740534
Alignment:
| Q |
226 |
agttgcttagttagtttgcacctgatgcagaaattaggagaacggaaaggcatatgaacaggaagacaatgtataatttgctagcagaagaaatcatgat |
325 |
Q |
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| T |
3740420 |
agttgcttagttagtttgtacctgatgcagaaataaggagaacgacaagacaaatgaacatgaagacagtgtagaatttactagtcgaggaaatcatgat |
3740519 |
T |
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| Q |
326 |
ttctaaatccaaata |
340 |
Q |
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| T |
3740520 |
ttctaaatctaaata |
3740534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 3729085 - 3729155
Alignment:
| Q |
1 |
aaaaatatgggattggaggcacacaataaccgtaagttgcatggtctttgttgatgcaaacttcattacaa |
71 |
Q |
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| T |
3729085 |
aaaaatatgggattggaggcacacaataaccataagttgcatgttctatgttgatgcagacttcattacaa |
3729155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 3740195 - 3740284
Alignment:
| Q |
1 |
aaaaatatgggattggaggcacacaataaccgtaagttgcatggtctttgttgatgcaaacttcattacaattggacttatcacaaccat |
90 |
Q |
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| T |
3740195 |
aaaaatatgggtttggaagaagacaatcaccataagttgcatgctctatgttgatgcatacttcattacaagaggacttgtcacaaccat |
3740284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 331
Target Start/End: Original strand, 3729307 - 3729412
Alignment:
| Q |
226 |
agttgcttagttagtttgcacctgatgcagaaattaggagaacggaaaggcatatgaacaggaagacaatgtataatttgctagcagaagaaatcatgat |
325 |
Q |
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| T |
3729307 |
agttgcttaaatagtttgtacctgatgtagaaataagaagaacgacgagacagatgaacatgaagacagtgcataatttactagttgaggaaatcatgat |
3729406 |
T |
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| Q |
326 |
ttctaa |
331 |
Q |
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|||||| |
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| T |
3729407 |
ttctaa |
3729412 |
T |
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