View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_39 (Length: 372)
Name: NF10271_low_39
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 121 - 363
Target Start/End: Complemental strand, 37358533 - 37358292
Alignment:
| Q |
121 |
tgaatccatggtaatgttccaacaacatactatatgataatatttttgatccaaatcttacctgaatgctaaaacttcaacaaactcagtttctatctga |
220 |
Q |
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| T |
37358533 |
tgaatccatggtaatgttccaacaacatactatatgataatatttttggttcaaatcttacctgaatgctaaaacttcaacaaactcagtttctatctga |
37358434 |
T |
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| Q |
221 |
aaagatgaataaaagcaaaatggccttagaaaaggtttgaatttcaaatattaaatatggttaaactacatttcatttaaatatgttttttctgtac-nn |
319 |
Q |
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| T |
37358433 |
aaagatgaataaaagcaatatggccttagaaaaggtttgaatttcaaatattaa--atgtttaaactacatttcatttaaatatgttttttctgtacaaa |
37358336 |
T |
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| Q |
320 |
nnnnnntgtttttgcttactcctgtctcttctttgacttctctg |
363 |
Q |
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| T |
37358335 |
aaaaaatgtttttgcttactcctgtctcttctttgacttctctg |
37358292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 37358636 - 37358580
Alignment:
| Q |
15 |
caaatagtatctctgatttttggaagaaacatttatgtctttctctgatataaccat |
71 |
Q |
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| T |
37358636 |
caaatagtatctctgatttttggaagaaacatttatgtctttctctgatataaccat |
37358580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 38393142 - 38393114
Alignment:
| Q |
178 |
ttacctgaatgctaaaacttcaacaaact |
206 |
Q |
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| T |
38393142 |
ttacctgaatgctaaaacttcaacaaact |
38393114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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